RNA id: TU122317


Basic Information

Item Value
RNA id TU122317
length 419
lncRNA type intronic
GC content 0.41
exon number 1
gene id G107737
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4350361 ~ 4350779 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTATACCTCATTagatccagagacagagagctcaACAGGAATAGTATTATACCTAATTAGACCCAACAGGAATAGTATTATACCTCATtagacccagagacagagagctcaACAGGAACAGTATTATACCTCATTagtcccagagacagagagctcaACAGGAACAGTATTATACCTCATtagacccagagacagagagctcaACAGGAACAGTATTATACCTCATTAGTCCCAGAGACAGAGTTCAACAGGAACAGAATTATACCTCATTagtcccagagacagagagctcaACAGGAATAGTATTATACCTCATTagtcccagagacagagagctcaACAGGAACAGTATTATACCTCATTagtcccagagacagagagctcaACAGGAACAGTATTATACCTCATTAGTCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122316 lncRNA downstream 2132 4348002 ~ 4348229 (-) True G107736
TU122302 lncRNA downstream 15410 4334661 ~ 4334951 (-) True G107730
TU122112 lncRNA downstream 31000 4318871 ~ 4319361 (-) True G107591
TU122109 lncRNA downstream 36574 4313537 ~ 4313787 (-) True G107588
TU122103 lncRNA downstream 45835 4303953 ~ 4304526 (-) True G107583
TU122318 lncRNA upstream 184 4350963 ~ 4351669 (-) True G107738
TU122322 lncRNA upstream 5468 4356247 ~ 4357103 (-) True G107742
TU122333 lncRNA upstream 17834 4368613 ~ 4368863 (-) True G107748
TU122335 lncRNA upstream 19678 4370457 ~ 4370829 (-) True G107750
TU122339 lncRNA upstream 24112 4374891 ~ 4375108 (-) True G107754
XM_036935477.1 mRNA downstream 113569 4227282 ~ 4236792 (-) False dscc1
XM_036935472.1 mRNA downstream 114511 4227282 ~ 4235850 (-) False dscc1
XM_036935468.1 mRNA downstream 127157 4172703 ~ 4223204 (-) True taf2
XM_036935463.1 mRNA downstream 127168 4170743 ~ 4223193 (-) False taf2
XM_036935456.1 mRNA downstream 183337 4122312 ~ 4167024 (-) True enpp2
XM_036935578.1 mRNA upstream 224658 4575437 ~ 4602797 (-) False mrpl13
XM_036935588.1 mRNA upstream 236252 4587031 ~ 4602716 (-) True mrpl13
XM_036935603.1 mRNA upstream 311554 4662333 ~ 4740091 (-) False sntb1
XM_036935620.1 mRNA upstream 311736 4662515 ~ 4740068 (-) False sntb1
XM_036935598.1 mRNA upstream 311736 4662515 ~ 4740076 (-) False sntb1
TU122094 other downstream 50131 4297445 ~ 4300230 (-) False G107576
TU122066 other downstream 53546 4295425 ~ 4296815 (-) True G107574
TU121876 other downstream 357514 3991326 ~ 3992847 (-) True G107456
TU121654 other downstream 574183 3752561 ~ 3776178 (-) False LOC110506994
TU122340 other upstream 25143 4375922 ~ 4376423 (-) True G107755
TU122474 other upstream 188456 4539235 ~ 4539623 (-) True G107843
TU122481 other upstream 199534 4550313 ~ 4551965 (-) True G107849
TU122777 other upstream 492282 4843061 ~ 4844091 (-) True G108033
TU123301 other upstream 889839 5240618 ~ 5241664 (-) True G108477

Expression Profile