RNA id: TU122159


Basic Information

Item Value
RNA id TU122159
length 249
lncRNA type intronic
GC content 0.38
exon number 1
gene id G107613
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4353584 ~ 4353832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatTTTGCCACATTGGTTATGGTTACATCATAATGATTTCCTTTTGCCATTTGTTTGATACAAAAGGTTACATTAGACTTGTTTCAATTTCCAGAACGTCTAATACCCTTTAATTAAAAGTGCAATTTCTCTGATCTTGATCgtgctgtttcctgtttcctgttggtGCTTCAGCATTAATCTGCTGAGTCATCACTTCCAAATGCTAGATCCATCCCCTAAATctccctcctctgttctctctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122158 lncRNA upstream 59 4353241 ~ 4353525 (+) True G107612
TU122157 lncRNA upstream 4422 4348867 ~ 4349162 (+) True G107611
TU122102 lncRNA upstream 47009 4306188 ~ 4306575 (+) True G107582
TU122101 lncRNA upstream 47585 4305709 ~ 4305999 (+) True G107581
TU122100 lncRNA upstream 48011 4305312 ~ 4305573 (+) True G107580
TU122160 lncRNA downstream 1197 4355029 ~ 4355288 (+) True G107614
TU122165 lncRNA downstream 10639 4364471 ~ 4364708 (+) True G107618
TU122177 lncRNA downstream 25026 4378858 ~ 4379314 (+) True G107625
TU122179 lncRNA downstream 28766 4382598 ~ 4383867 (+) True G107627
TU122188 lncRNA downstream 33695 4387527 ~ 4388933 (+) False G107632
XM_036935488.1 mRNA upstream 51048 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA upstream 51048 4236884 ~ 4302536 (+) False deptor
XM_036935497.1 mRNA upstream 51048 4237051 ~ 4302536 (+) False deptor
XM_036935484.1 mRNA upstream 51048 4237055 ~ 4302536 (+) False deptor
XM_036935442.1 mRNA upstream 233842 4113122 ~ 4119742 (+) True LOC110507036
XM_036935553.1 mRNA downstream 249126 4602958 ~ 4648521 (+) False LOC110520696
XM_036935527.1 mRNA downstream 249127 4602959 ~ 4654733 (+) False LOC110520696
XM_036935529.1 mRNA downstream 249127 4602959 ~ 4654733 (+) False LOC110520696
XM_036935531.1 mRNA downstream 249127 4602959 ~ 4654733 (+) False LOC110520696
XM_036935534.1 mRNA downstream 249127 4602959 ~ 4654733 (+) False LOC110520696
TU120937 other upstream 215088 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 215088 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 325990 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 553232 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 390336 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 454907 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 504079 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 782524 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 942347 5296179 ~ 5299933 (+) True G108354

Expression Profile