RNA id: TU122243


Basic Information

Item Value
RNA id TU122243
length 233
lncRNA type intronic
GC content 0.48
exon number 2
gene id G107680
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4526567 ~ 4527074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttgcctctctctgtctctcaccatcACACCTGTGGAACATTCATTACAGAGGtctttgcctctctctgtctctcaccatcACACCTCCGGAACATCCATTACAGAGctctttgcctctctctgtctctcaccatcACACCTCCGGAACATCCATTACAGAGGTCTTTGCCTCTCTATTTCTTTCACCATCACACCTCCGGAACATCCATTAAAGAGGtctttgcctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122225 lncRNA upstream 60403 4464960 ~ 4466164 (+) True G107664
TU122202 lncRNA upstream 110510 4414375 ~ 4416057 (+) True G107645
TU122188 lncRNA upstream 137634 4387527 ~ 4388933 (+) False G107632
TU122186 lncRNA upstream 137634 4388334 ~ 4388933 (+) True G107632
TU122179 lncRNA upstream 142700 4382598 ~ 4383867 (+) True G107627
TU122247 lncRNA downstream 12562 4539636 ~ 4540300 (+) False G107682
TU122246 lncRNA downstream 13463 4540537 ~ 4541278 (+) True G107682
TU122260 lncRNA downstream 54242 4581316 ~ 4581677 (+) True G107693
TU122264 lncRNA downstream 69112 4596186 ~ 4599513 (+) True G107697
TU122270 lncRNA downstream 88464 4615538 ~ 4616062 (+) True G107703
XM_036935488.1 mRNA upstream 224031 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA upstream 224031 4236884 ~ 4302536 (+) False deptor
XM_036935497.1 mRNA upstream 224031 4237051 ~ 4302536 (+) False deptor
XM_036935484.1 mRNA upstream 224031 4237055 ~ 4302536 (+) False deptor
XM_036935442.1 mRNA upstream 406825 4113122 ~ 4119742 (+) True LOC110507036
XM_036935553.1 mRNA downstream 75884 4602958 ~ 4648521 (+) False LOC110520696
XM_036935527.1 mRNA downstream 75885 4602959 ~ 4654733 (+) False LOC110520696
XM_036935529.1 mRNA downstream 75885 4602959 ~ 4654733 (+) False LOC110520696
XM_036935531.1 mRNA downstream 75885 4602959 ~ 4654733 (+) False LOC110520696
XM_036935534.1 mRNA downstream 75885 4602959 ~ 4654733 (+) False LOC110520696
TU120937 other upstream 388071 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 388071 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 498973 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 726215 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 217094 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 281665 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 330837 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 609282 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 769105 5296179 ~ 5299933 (+) True G108354

Expression Profile