RNA id: TU122247


Basic Information

Item Value
RNA id TU122247
length 427
lncRNA type intronic
GC content 0.50
exon number 2
gene id G107682
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4539636 ~ 4541278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGTTCCTCTGTCATGTTTCCTCTGTCATGTTTCCTCTCTCATGTTTCCTAGGTTCTCTGTCCCATCTTCTTCTTGCTAAGTAAAACCTTGTACTTCACTGTAATCTGGTCACATCCCACTAAAATGTTCAGACACTTGTCATAGCTGCCCTTTTCCACGGGTCTCAGGAGAGCTCTAGTCTGActggctgtgtgagtgtgtgtcttgtCAGTGTGGTTGTCATGGCGACGAGAGGTAGAGGATCAGCTAGGGGCCACACTGAGCTCACTgagctccacctctctcctccaatGTCCACTCTTGGCATATCATTCCTGGAATATACtctacacctgacacacacacacacacacacacacacacacacccgcacacacacacccgcacacacacacacacacacacacacacccgcacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122243 lncRNA upstream 12562 4526567 ~ 4527074 (+) True G107680
TU122225 lncRNA upstream 73472 4464960 ~ 4466164 (+) True G107664
TU122202 lncRNA upstream 123579 4414375 ~ 4416057 (+) True G107645
TU122188 lncRNA upstream 150703 4387527 ~ 4388933 (+) False G107632
TU122186 lncRNA upstream 150703 4388334 ~ 4388933 (+) True G107632
TU122246 lncRNA downstream 237 4540537 ~ 4541278 (+) True G107682
TU122260 lncRNA downstream 41016 4581316 ~ 4581677 (+) True G107693
TU122264 lncRNA downstream 55886 4596186 ~ 4599513 (+) True G107697
TU122270 lncRNA downstream 75238 4615538 ~ 4616062 (+) True G107703
TU122278 lncRNA downstream 98176 4638476 ~ 4640436 (+) True G107709
XM_036935521.1 mRNA upstream 1579 4327983 ~ 4538057 (+) False col14a1a
XM_036935488.1 mRNA upstream 237100 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA upstream 237100 4236884 ~ 4302536 (+) False deptor
XM_036935497.1 mRNA upstream 237100 4237051 ~ 4302536 (+) False deptor
XM_036935484.1 mRNA upstream 237100 4237055 ~ 4302536 (+) False deptor
XM_036935553.1 mRNA downstream 62658 4602958 ~ 4648521 (+) False LOC110520696
XM_036935527.1 mRNA downstream 62659 4602959 ~ 4654733 (+) False LOC110520696
XM_036935529.1 mRNA downstream 62659 4602959 ~ 4654733 (+) False LOC110520696
XM_036935531.1 mRNA downstream 62659 4602959 ~ 4654733 (+) False LOC110520696
XM_036935534.1 mRNA downstream 62659 4602959 ~ 4654733 (+) False LOC110520696
TU120937 other upstream 401140 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 401140 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 512042 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 739284 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 203868 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 268439 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 317611 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 596056 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 755879 5296179 ~ 5299933 (+) True G108354

Expression Profile