RNA id: TU122460


Basic Information

Item Value
RNA id TU122460
length 3457
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G107837
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4568710 ~ 4572308 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAAGGTTTGGTGGCATGGTCTAACGAGACATTTCACTGGTACCTGTTAGTTCTACATTCTGAATTCCATTTCTGTCCAAAAACACAAATTAGACCACAGGCCTAACTATATTCAACACTCTCCTCACAGTGGACGGGCACCACGTTGCATAATCatcataataacaacaacaaattgGGAAAGGCAATAAGGAAAACATTAAACTTCAGATTTGTGGCGCTCATCACAAGTCATTCCAGCACCTTCTCTGTCGTTGCCTGTGACGAGAGTAAGCGAAACTAACACCCAGTCGGACAAGACCAAGTCCAGGTCAATTAACAATGTGATAACAGGACGATTGGACAAGACCAAGACCAAGTCCAGGTCAATCAACAATGTGATAACAGGACGATTGGACAAGAACGCTTGAGAGTCTTACAATAGCTGTAGTTTTCTTTGCTAGGACAGTGGTTAAAGTTTGGTTCCTTAATGTTTAGGcatacttaaaaaaaacaaattccTCATCGTACAAtaacagtgggggggggggggggggggggctgcttcaACAGAGGTCACAATGTATCATATTAAATCAAGAAGAGAGGACACTGTACACAAATACTGAAAAAAATCATTGTGAGAACTGGCTTGACAACTTAAAGATTGAGGGTCAAGTCAACATGGAAGCACTGTAATGTAAATGACACATGGTTATAAAGAGCTGGCAGACTGTTCAAATGGCAGCCGTTCATAATCTCAAATTACAAAAAGACGTTTGACTTTATGTCACATCAACCCAAAAGACACAGTCCAGTCATCCTCGATGTGCTGGCTCAAAGGCTGCATGCAACTTCACTAGAAAGGTAAGTGATTTTAATGTACGTCACTGGGGATAGCTTGTCTTCCTCAGTCCCCCTACATCCCACACACCAGCATTTACAGAAATCAGGCACTTTTTTTTTAggtatatcctaatctgacagcGCTCTCATACAGGAATAGCATACAGGAGACCCTGGCTAGCGACACGGGGGCAACTGACGCATACCGAACACATTTTTGACATCTTCATCAACCCACAGGGACATAGAGAGGTGGTTGGACTGTCTGtccagtctggtctctctgtccagtctGTCCAGTCTGGACTTCTCCAatcacctccacctctccttcagaATCTGCTGCAACATCGCTCCTCTgtcctgtctggtctgtctgtccagTCTGTCCTGTCTGGACTTCTCCAatcacctccacctctccttcagtATCTGCTGTAGCATCGCTCCTCTGTccagtctggtctgtctgtcctgtctgggcTGTGTTAGCGGTGGCTCTTCTCTGTGTGACCACGTCTCTGGAGAAACGGCTCATCATTATCCCTGGGGACCTTAGCTCAGTGTCCTGGGAGTGGGATTGGGGTGCAGGGCGTGCAGGGGGGTGAGGGTAACTGGGCTGGTAGTACTGAGGTGGGTAGCCTCTATACCCAGCGAAtgggtcctcttcctcctcatcttcctcgtCGTCTTCATCATCGTTGTTGTCATAACGGCCAGTGGGGTGATAGTTTTGGTAGTTGGTGTGGGGGAGTTGTTGTACTATGGTGGGGAACATCTGGATCAATGGGGTGTCATCACTAGCAACCTCTTTCTAAACCACCACCGCTAAGTTAGCTTGTTGCCCGGGGTTGTTAGCTTGTTGCCCGGGGTTGTTAGCTTGTTGCCCGGGGTAGCATCTGGGTTAGCAGAATGACGTACAGGAGAAAGCAGACAGAGAGCCACAGGCACAATATTACTGCAGTGAGAAATAAGAACACAGTGTGTAGCCGTGCCTGTATAAGAGAGAGGGTGAGCCACACCAGTGGGAGTAAGTGGGAGTCTGATTAGTATTTGTCATTCACAAGGATACCTTGATCAGGAGAGAGAAGATATACACAGGGAGGAAGGAAGATGGCGGCTGGTGGCCGGCTGGAGAAAAGCATTGTCTAGGAAACAATATCTTCTGATTCATGTCTTTTATAAAAATCCAGATGGGTTGTTTTCCAAGCGGGGTGATGTGAAGCGAGGTTAGCAAGATCAACACACAATGTCTGATGACAGGCAGAGATAGATGGAGACTGAAGCGATGTCTGATGACAGGCAGAGATAGATGGAGACTGAAGCAATGTCTGATGACGGGCAGAGATAGATGGAGACTGAAGCGATGTCTGATGACAGGCAGAGATAGATGGAGACTGAAGCAATGTCTGATGACAGGCAGAGATAGATGGAGACTGAAGCAATGTCTGATGACGGGCAGAGATAGATGGAGACTGAAGCGATGTCTGATGACAGGCAGAGATAGATGGAGACTGAAGCAATGTCTGATGACAGGCAGAGATAGATGGAGACTGAAGCGATAGTTTGAACACGGCGGTGGTGATCTCAGGAGGTAGTAAGgggtgaagggaggaggggagtgataGTCTCTATGTGGGGAAGAAAAGATGGGAGAGCGGCACAGAGAGGGTGGCTGAGGGTCTctatgaggggaggggagagggtggcTGAGGGTCTCTTtctgtggggagaggagagggtggctgATGGTCTCTTtctgtggggagaggagagggtggctgATGGTCTCTttatgaggggagaggagagggtggctgATGGTCTCTTTctgtggggaggggagagggtggcTGAGGGTCTCtctgtggggagaggagagggtggctgAGGGTCTCTAtgtgggtagaggagagggtggcTGATGGTCTCTTTAcgtgggtagaggagagggtggcTGATGGTCTCTTTATGTGGGGAGgggagagggtggcTGATGGTCTCTttatgaggggagaggagaggagagggtggctgATGGTCTCTTTatgtggggaggggagagggtggcTGATGGTCTCTTTAtttggggaggggagagggtggcTGATGGTCTCTTtatgatgggagaggagagggtggctgATGGACTATTTTTatgaggaagaagggagggaggaggggagggaggagacggtGTCTGATGGTCTATTTTTGTGCggcagaagggagggagggaggagagggaggaggggagggaggagtgtgtgtctgATGGTCTATTTTTGTGCggcagaagggagggagggaggtaggagagggTGTCTGATGGTCTCTTTAtgatgggaggggagaggagagggtggctgATGGACTCatcggagaggagagggtggctgATGGActatgaggggaggggagaggagagggtgtctGATGGACTCatcggagaggagagggtggctgATGGACTCatcggagaggagaggagagggaggtaggagagggtgggaggaagggaggtaggagtgggagggaggtaggagaggagagggtgggaggagaggagagggtgtctGGAACTAAGAGAATGTTGCTCAGTAGTCATTCTCATATTCCTGTTCCTGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122483 lncRNA downstream 14820 4553641 ~ 4553890 (-) True G107851
TU122470 lncRNA downstream 30874 4536899 ~ 4537836 (-) False G107841
TU122471 lncRNA downstream 30874 4536899 ~ 4537836 (-) False G107841
TU122472 lncRNA downstream 30874 4536899 ~ 4537836 (-) True G107841
TU122457 lncRNA downstream 41626 4526803 ~ 4527084 (-) True G107835
TU122491 lncRNA upstream 4045 4576353 ~ 4577349 (-) True G107858
TU122494 lncRNA upstream 9239 4581547 ~ 4582418 (-) True G107861
TU122495 lncRNA upstream 16428 4588736 ~ 4590303 (-) True G107862
TU122511 lncRNA upstream 40550 4612858 ~ 4615672 (-) False G107873
TU122513 lncRNA upstream 40550 4612858 ~ 4614515 (-) True G107873
XM_036935477.1 mRNA downstream 331918 4227282 ~ 4236792 (-) False dscc1
XM_036935472.1 mRNA downstream 332860 4227282 ~ 4235850 (-) False dscc1
XM_036935468.1 mRNA downstream 345506 4172703 ~ 4223204 (-) True taf2
XM_036935463.1 mRNA downstream 345517 4170743 ~ 4223193 (-) False taf2
XM_036935456.1 mRNA downstream 401686 4122312 ~ 4167024 (-) True enpp2
XM_036935578.1 mRNA upstream 3129 4575437 ~ 4602797 (-) False mrpl13
XM_036935588.1 mRNA upstream 14723 4587031 ~ 4602716 (-) True mrpl13
XM_036935603.1 mRNA upstream 90025 4662333 ~ 4740091 (-) False sntb1
XM_036935620.1 mRNA upstream 90207 4662515 ~ 4740068 (-) False sntb1
XM_036935598.1 mRNA upstream 90207 4662515 ~ 4740076 (-) False sntb1
TU122481 other downstream 16745 4550313 ~ 4551965 (-) True G107849
TU122474 other downstream 29087 4539235 ~ 4539623 (-) True G107843
TU122340 other downstream 192287 4375922 ~ 4376423 (-) True G107755
TU122094 other downstream 268480 4297445 ~ 4300230 (-) False G107576
TU122066 other downstream 271895 4295425 ~ 4296815 (-) True G107574
TU122777 other upstream 270753 4843061 ~ 4844091 (-) True G108033
TU123301 other upstream 668310 5240618 ~ 5241664 (-) True G108477
TU124209 other upstream 850189 5422497 ~ 5430757 (-) True LOC110520858
TU124444 other upstream 1265369 5837677 ~ 5840273 (-) True G109302
TU124426 other upstream 1289261 5861569 ~ 5862730 (-) True atxn1b

Expression Profile