RNA id: TU122260


Basic Information

Item Value
RNA id TU122260
length 246
lncRNA type intronic
GC content 0.46
exon number 2
gene id G107693
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4581316 ~ 4581677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTATAACCACTACACCAGTTAACACCCTATAACCACTACACCAGTTAACACCCTATAACCACTACACCAGTTAACACCCTATAACCACCCTGTAACGACTACACCAGTTAACGCCCTGTAACCACTACACCAGTTAACACCCTGTAACCACTACACCAGTTAACACCCTGTAACCACTACACCAGTTAACACCCTGTAACCACTACACCAGTTAACACCCTGTAACCACTACACCAGTTAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122246 lncRNA upstream 40038 4540537 ~ 4541278 (+) True G107682
TU122247 lncRNA upstream 41016 4539636 ~ 4540300 (+) False G107682
TU122243 lncRNA upstream 54242 4526567 ~ 4527074 (+) True G107680
TU122225 lncRNA upstream 115152 4464960 ~ 4466164 (+) True G107664
TU122202 lncRNA upstream 165259 4414375 ~ 4416057 (+) True G107645
TU122264 lncRNA downstream 14509 4596186 ~ 4599513 (+) True G107697
TU122270 lncRNA downstream 33861 4615538 ~ 4616062 (+) True G107703
TU122278 lncRNA downstream 56799 4638476 ~ 4640436 (+) True G107709
TU122286 lncRNA downstream 65103 4646780 ~ 4647797 (+) True G107714
TU122583 lncRNA downstream 80847 4662524 ~ 4668610 (+) False G107896
XM_036935508.1 mRNA upstream 8935 4327990 ~ 4572381 (+) False col14a1a
XM_036935511.1 mRNA upstream 8935 4327990 ~ 4572381 (+) True col14a1a
XM_036935515.1 mRNA upstream 10313 4327986 ~ 4571003 (+) False col14a1a
XM_036935520.1 mRNA upstream 11664 4327987 ~ 4569652 (+) False col14a1a
XM_036935521.1 mRNA upstream 43259 4327983 ~ 4538057 (+) False col14a1a
XM_036935553.1 mRNA downstream 21281 4602958 ~ 4648521 (+) False LOC110520696
XM_036935527.1 mRNA downstream 21282 4602959 ~ 4654733 (+) False LOC110520696
XM_036935529.1 mRNA downstream 21282 4602959 ~ 4654733 (+) False LOC110520696
XM_036935531.1 mRNA downstream 21282 4602959 ~ 4654733 (+) False LOC110520696
XM_036935534.1 mRNA downstream 21282 4602959 ~ 4654733 (+) False LOC110520696
TU120937 other upstream 442820 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 442820 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 553722 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 780964 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 162491 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 227062 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 276234 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 554679 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 714502 5296179 ~ 5299933 (+) True G108354

Expression Profile