RNA id: TU122556


Basic Information

Item Value
RNA id TU122556
length 465
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G107892
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4650211 ~ 4653762 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTAATAAATGGTTGACAGGTTACCTGCTTGGCATTGCTGCTGGCTGCTTTCATCATTTCCTCATGAAGGCCCCTGGACGTCTTCAGATCCTTTTGGAGAAAAGGAATACATTGTGATGCCAGCTTATGTCTCTATAGTCTCTGGGGTGATGATGTAACAGTCAGCttatctctctatagtctctggggtgatgatgtaacagtcagcttatctctctatagtctctgggGTGATGATGTAACAGTCAGCTGCTATAGTCAGGTCAGACAGCCAGCttatctctctatagtctctggggtgatgatgtaacagtcagctGCTATAGTCAGGTCAGACAGCCAGCTTATCTATCTTATTTAACATAGTTGAACAGGGCAAATTAAAAGCTCAGGACAAGGCAATACAAGACAATCTGTCTAACAATCTGTCTTACGGTCTTAGTTGTCATTCTGTCATTGAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122552 lncRNA downstream 6124 4643292 ~ 4644087 (-) True G107889
TU122530 lncRNA downstream 14100 4634561 ~ 4636111 (-) True G107885
TU122521 lncRNA downstream 26587 4622744 ~ 4623624 (-) True G107878
TU122511 lncRNA downstream 34539 4612858 ~ 4615672 (-) False G107873
TU122513 lncRNA downstream 35696 4612858 ~ 4614515 (-) True G107873
TU122557 lncRNA upstream 138 4653900 ~ 4654724 (-) False G107893
TU122559 lncRNA upstream 138 4653900 ~ 4654724 (-) False G107893
TU122560 lncRNA upstream 138 4653900 ~ 4654724 (-) False G107893
TU122562 lncRNA upstream 138 4653900 ~ 4654724 (-) False G107893
TU122565 lncRNA upstream 138 4653900 ~ 4654724 (-) False G107893
XM_036935578.1 mRNA downstream 47414 4575437 ~ 4602797 (-) False mrpl13
XM_036935588.1 mRNA downstream 47495 4587031 ~ 4602716 (-) True mrpl13
XM_036935477.1 mRNA downstream 413419 4227282 ~ 4236792 (-) False dscc1
XM_036935472.1 mRNA downstream 414361 4227282 ~ 4235850 (-) False dscc1
XM_036935468.1 mRNA downstream 427007 4172703 ~ 4223204 (-) True taf2
XM_036935603.1 mRNA upstream 8571 4662333 ~ 4740091 (-) False sntb1
XM_036935620.1 mRNA upstream 8753 4662515 ~ 4740068 (-) False sntb1
XM_036935598.1 mRNA upstream 8753 4662515 ~ 4740076 (-) False sntb1
XM_036935614.1 mRNA upstream 14389 4668151 ~ 4740098 (-) False sntb1
XM_036935624.1 mRNA upstream 14392 4668154 ~ 4740093 (-) True sntb1
TU122481 other downstream 98246 4550313 ~ 4551965 (-) True G107849
TU122474 other downstream 110588 4539235 ~ 4539623 (-) True G107843
TU122340 other downstream 273788 4375922 ~ 4376423 (-) True G107755
TU122094 other downstream 349981 4297445 ~ 4300230 (-) False G107576
TU122066 other downstream 353396 4295425 ~ 4296815 (-) True G107574
TU122777 other upstream 189299 4843061 ~ 4844091 (-) True G108033
TU123301 other upstream 586856 5240618 ~ 5241664 (-) True G108477
TU124209 other upstream 768735 5422497 ~ 5430757 (-) True LOC110520858
TU124444 other upstream 1183915 5837677 ~ 5840273 (-) True G109302
TU124426 other upstream 1207807 5861569 ~ 5862730 (-) True atxn1b

Expression Profile