RNA id: TU122586



Basic Information


Item Value
RNA id TU122586
length 983
lncRNA type antisense_over
GC content 0.40
exon number 4
gene id G107898
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4706199 ~ 4707474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAATAAGAGAGTGATGAAAGAGGATttagaggaggacgaggagggggGAAAACCTGGAGTCACGCAGGGAAAAGTCACCTGGGATCAATAGCTGCTGTACTGTATAGAAGGAACACTCTTCTGTTGGAAACTACTGCATCAGCTATACTGTATGAGGTTCCAAGAATGCTTGGCTCACTATCGTATAACTGCCTCACAAACATCACATATGAGTTATTATCAGAAGGTGGGCCGTGAAGGCATATTATAGATCTGATTCACAAACATCACATATGAGTTATTATCAGAAGGTGGTCTGTGAAGGCATATTATAGATCTGATTCACAAACATCACATATGAGTTATTATCAGAAGGTGGTCTGTGAAGGCATATTATAGATCTGATTCACAAACATCACATATGAGTTATTATCAGAAGGTGGTCTGTGAAGGCATATTATAGATCTGATTCACAAACATCACATATGAGTTATTATCAGAAGGTGGGCCGTGAAGGCATATTATAGATCTGATTCACAAACATCACATATGAGTTATTATCAGAAGGTGGTCTGTGAAGGCATATTATAGATCTGATTCACAAACATCACATATGAGTTATTATCAGAAGGTGGTCCGTGAAGGCATATTATAGATCTGATTCACAAACATCACATATGAGTTATTATCAGAAGGTGGTCTGTGAAGGAATATTacagatCTGATTAAAGGTGAGCAAGTTTCTTTCATGTGTTTTCCTGCACCAACATTCAATAAAGTACAGAGTAGATCCTACCttctcagccagccagcccaggTGTCTGATCTCTCTGCTCCCTGCGATTCCTGTTCTTCCCGTGTGCTCTTTGACCTCTGTGATGACCTTGTTGATGAGGTCAGAGGTCGCCGACTGCATGACCTCGAACCAGGCCTGGGCCGAGGCTGCGTCTCTACACCGTAACACCACCGTGTGCTTGGCGTCCGGAGAGTGCAGCTCCAACTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU122583 lncRNA upstream 37589 4662524 ~ 4668610 (+) False G107896
TU122584 lncRNA upstream 37589 4662524 ~ 4668610 (+) True G107896
TU122286 lncRNA upstream 58402 4646780 ~ 4647797 (+) True G107714
TU122278 lncRNA upstream 65763 4638476 ~ 4640436 (+) True G107709
TU122270 lncRNA upstream 90137 4615538 ~ 4616062 (+) True G107703
TU122607 lncRNA downstream 2615 4710089 ~ 4710939 (+) True G107911
TU122611 lncRNA downstream 4070 4711544 ~ 4722290 (+) True G107912
TU122620 lncRNA downstream 24483 4731957 ~ 4733848 (+) True G107917
TU122623 lncRNA downstream 27772 4735246 ~ 4737254 (+) True LOC118937361
TU122648 lncRNA downstream 55817 4763291 ~ 4764472 (+) True G107932
XM_036935527.1 mRNA upstream 51466 4602959 ~ 4654733 (+) False LOC110520696
XR_005034649.1 mRNA downstream 28183 4735657 ~ 4737279 (+) False LOC118937361
XR_005034652.1 mRNA downstream 28183 4735657 ~ 4737279 (+) False LOC118937361
XR_005034651.1 mRNA downstream 28183 4735657 ~ 4737280 (+) False LOC118937361
XR_005034655.1 mRNA downstream 28183 4735657 ~ 4737281 (+) False LOC118937361
XR_005034653.1 mRNA downstream 28183 4735657 ~ 4737282 (+) False LOC118937361
TU120937 other upstream 567703 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 567703 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 678605 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 905847 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 36694 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 101265 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 150437 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 428882 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 588705 5296179 ~ 5299933 (+) True G108354

Expression Profile