Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028055 |
| length | 546 |
| lncRNA type | retained_intron |
| GC content | 0.45 |
| exon number | 4 |
| gene id | XLOC_014074 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 24872159 ~ 24889227 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0018105 | peptidyl-serine phosphorylation | biological_process |
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0048812 | neuron projection morphogenesis | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0035091 | phosphatidylinositol binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0015459 | potassium channel regulator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-7626 | Predicted to enable potassium channel regulator activity and protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction; neuron projection morphogenesis; and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. |
| ensembl_id | ENSDART00000151390 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00029721 | lncRNA | upstream | 82324 | 24802542 ~ 24802792 (+) | True | XLOC_014073 |
| TCONS_00029912 | lncRNA | upstream | 124642 | 24758171 ~ 24760474 (+) | False | XLOC_014072 |
| TCONS_00029913 | lncRNA | upstream | 124642 | 24758671 ~ 24760474 (+) | True | XLOC_014072 |
| TCONS_00029911 | lncRNA | upstream | 127033 | 24756852 ~ 24758083 (+) | True | XLOC_014071 |
| TCONS_00029910 | lncRNA | upstream | 280786 | 24600028 ~ 24604330 (+) | True | XLOC_014070 |
| TCONS_00028059 | lncRNA | downstream | 36586 | 24922531 ~ 24935295 (+) | True | XLOC_014076 |
| TCONS_00029914 | lncRNA | downstream | 73284 | 24959229 ~ 24983508 (+) | True | XLOC_014077 |
| TCONS_00029915 | lncRNA | downstream | 117572 | 25003517 ~ 25060967 (+) | True | XLOC_014078 |
| TCONS_00028060 | lncRNA | downstream | 265471 | 25151416 ~ 25152577 (+) | True | XLOC_014079 |
| TCONS_00029916 | lncRNA | downstream | 2147928 | 27033873 ~ 27041528 (+) | True | XLOC_014097 |
| TCONS_00028052 | mRNA | upstream | 287839 | 24596324 ~ 24597277 (+) | True | XLOC_014069 |
| TCONS_00028051 | mRNA | upstream | 295873 | 24575077 ~ 24589243 (+) | True | XLOC_014068 |
| TCONS_00028049 | mRNA | upstream | 392790 | 24488403 ~ 24492326 (+) | False | XLOC_014066 |
| TCONS_00028048 | mRNA | upstream | 485278 | 24394560 ~ 24399838 (+) | True | XLOC_014064 |
| TCONS_00028047 | mRNA | upstream | 492949 | 24374196 ~ 24392167 (+) | True | XLOC_014062 |
| TCONS_00028056 | mRNA | downstream | 5802 | 24891747 ~ 24915520 (+) | False | XLOC_014075 |
| TCONS_00028057 | mRNA | downstream | 5821 | 24891766 ~ 24915516 (+) | False | XLOC_014075 |
| TCONS_00028058 | mRNA | downstream | 10464 | 24896409 ~ 24917208 (+) | True | XLOC_014075 |
| TCONS_00028061 | mRNA | downstream | 268121 | 25154066 ~ 25155258 (+) | True | XLOC_014080 |
| TCONS_00028063 | mRNA | downstream | 579080 | 25465025 ~ 25467185 (+) | True | XLOC_014082 |
| TCONS_00028035 | other | upstream | 971816 | 23913182 ~ 23913300 (+) | True | XLOC_014055 |
| TCONS_00028032 | other | upstream | 1230402 | 23652399 ~ 23654714 (+) | False | XLOC_014053 |
| TCONS_00028033 | other | upstream | 1230402 | 23652781 ~ 23654714 (+) | False | XLOC_014053 |
| TCONS_00028034 | other | upstream | 1230402 | 23653700 ~ 23654714 (+) | True | XLOC_014053 |
| TCONS_00028031 | other | upstream | 1243785 | 23637789 ~ 23641331 (+) | True | XLOC_014052 |
| TCONS_00028062 | other | downstream | 289327 | 25175272 ~ 25175392 (+) | True | XLOC_014081 |
| TCONS_00028068 | other | downstream | 622848 | 25508793 ~ 25511562 (+) | True | XLOC_014083 |
| TCONS_00028073 | other | downstream | 1306877 | 26192822 ~ 26192936 (+) | True | XLOC_014087 |
| TCONS_00028077 | other | downstream | 1690649 | 26576594 ~ 26576708 (+) | True | XLOC_014090 |
| TCONS_00028082 | other | downstream | 1919821 | 26805766 ~ 26805882 (+) | True | XLOC_014093 |
