RNA id: TU122620


Basic Information

Item Value
RNA id TU122620
length 1836
lncRNA type intronic
GC content 0.44
exon number 2
gene id G107917
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4731957 ~ 4733848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcccaaatgggttttgtgggtagttgttttctgtgttgtgtatttgcaccttgcagaactgttcgtttgttgtttttgttcaagtGTTGGTATTTATTAAACCTATTATGAATACTTACCCACgatgcaccttggtcctcttctccttctcccgacgacaTTCGTTACATCGTTTTTTGCTACAAAAGACTAGAGCTCAAACTGAATCTGAATAATTAACTCGTGTAAGATTTCTTTTTTGATAATTAATGTATTTGCAAACATACAGCAGGAGAGAATAATGACTGCATTGAAATAGAAATAACATCTAAAAATGTATCATGGTTTGGTCGTGTTCTTACTCATCGACCACATTGTCCTGTTAATTCATGTGGTTTGGGCCGTACGTCTCTACTCCATCCTGCTTGTTCGTAGAAAAACGGTCCGAATGAGCTTTCTGAATGAATCAACGTCACCATAGAAACCCAGCTGGTAGAAACCCCAAGTCATTGAGAGAATCTCAACCTAATGGTTGGGTGCAAGTCATTTCTTCTTCAGTTATTATCCATACAATGGAAGCCATTATAGAAGCCGGCATGTCTCTGAATTCTGAAATAACATTAAATCTATCTGCCCTATTGTCAGGTGTATTAATAACCAAGTCTTTGTGTTGTCAGCCTGTTAACTAGACACAGCCATTAGAGCTAGTTACATGTATTAACGTGGGAACAGAATGGAGAGCTTTGTTAGCTGCACTTATTGAGCCGAGAGAAGAAAATGGCTAATTTGACGTGAGTAACTTCTGGATGAATAAAACAACCAGGAACAAAAGGGGACTTTTTTTGATGAGACTTTAATTgcagaatagaatggaactcTTGTTTTTACCTCCTCTGAATGGGCAGGTAGATACTGCTCCAGAACAAAACACAAAATACACAGAGGTCTACAAGGTATATTTTCCCCCTCTGCCGCCTGAAAAGGTCTGATGTTATCAAAGCAAGAACAGGTACTTGAACGCCCGGTTCAATGGACTACAGTTTATATCAACTTTAGCAGAAATATTTGTAAGGACCgtttggtggaagaaggtgaggaccaggATGCAGCGTGGCAaagtgttcatgtttttaaaaccgtaatgaacactgaacaaaacaaataaaacgacaaaacaacaacagtcctgtgtggtgctgaaaaaacactgaacagaaaataaatcacccacaactcaagggtgaaaacaggctgcctaaagtACGGTTCTCAATcggggacaacgattgacagctgcctctgattgagaaccataccaggccaaacacagaaaataccaactcatagaaaaacaaacatagacaaccccacccaactcaagccctgaccatactaaaacaaagacataacaaaataactaagttcagaacgtgacaatattaGATCATATCACAGTGAGATTGACTGTGTTCATAGCATGACTTCTATGTTAAGAACAACAAGGTAGGGAGTCTGTGTTAAGAACAACAGGGTGGGGAGTCTGTGTTAAGAACAACAAGGTGGGGAGTCTGTGTTAAGAACAACAAGGTGGGGAGTCTGTGTTAAGAACAACAAGGTGGGGAGTCTGTGTTAAGAACAACAAGGTGGGGAGTCTGTACTGGAGCTTTATGGGGAAAACAAGCAAAGGaaaatattcaaataatgatttcaGTCAAACAATCAAACAGTAAATTCACAGAGTGGATAACAGGAGTGTTGAGAAAACTGATGTATAAACTGTACTAGGGCCAGGAGTAGATGGTTCACTCTGTCAtcacagcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122611 lncRNA upstream 9667 4711544 ~ 4722290 (+) True G107912
TU122607 lncRNA upstream 21018 4710089 ~ 4710939 (+) True G107911
TU122586 lncRNA upstream 24483 4706199 ~ 4707474 (+) True G107898
TU122583 lncRNA upstream 63347 4662524 ~ 4668610 (+) False G107896
TU122584 lncRNA upstream 63347 4662524 ~ 4668610 (+) True G107896
TU122623 lncRNA downstream 1398 4735246 ~ 4737254 (+) True LOC118937361
TU122648 lncRNA downstream 29443 4763291 ~ 4764472 (+) True G107932
TU122660 lncRNA downstream 50783 4784631 ~ 4785544 (+) True G107942
TU122677 lncRNA downstream 85885 4819733 ~ 4820296 (+) True G107958
TU122686 lncRNA downstream 103535 4837383 ~ 4837938 (+) True G107965
XM_036935527.1 mRNA upstream 77224 4602959 ~ 4654733 (+) False LOC110520696
XR_005034649.1 mRNA downstream 1809 4735657 ~ 4737279 (+) False LOC118937361
XR_005034652.1 mRNA downstream 1809 4735657 ~ 4737279 (+) False LOC118937361
XR_005034651.1 mRNA downstream 1809 4735657 ~ 4737280 (+) False LOC118937361
XR_005034655.1 mRNA downstream 1809 4735657 ~ 4737281 (+) False LOC118937361
XR_005034653.1 mRNA downstream 1809 4735657 ~ 4737282 (+) False LOC118937361
TU120937 other upstream 593461 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 593461 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 704363 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 931605 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 10320 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 74891 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 124063 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 402508 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 562331 5296179 ~ 5299933 (+) True G108354

Expression Profile