RNA id: TU122673


Basic Information

Item Value
RNA id TU122673
length 2730
RNA type TUCP
GC content 0.43
exon number 2
gene id G107955
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4808739 ~ 4811575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAACACAAAAGTGCTTCAGGATAATACTACCCATGATCCCAAAATCACGGTTCAATATTCGGTCTGATCAATTCtaataaaatggattaaaatgtgTTCTTAAACTCTCTAAAGAGTCAATAATCAATAATCAATACTCTGGAATAGATCATTACATTTTTTGCGAAAATGTATCTTTTGGGATTTTAATCTGATGTGGATTAACGCATTGTTTATACAATTTTCAGAACGCATCATGTGACGAAAGTCCTCATGTGTATGAAACCTTGAAACCTATTTCAGGAAGTCCTACAGTAAGGCAAGAGGTGGTCAAAACCGCCGCCTGAAGAGATACTGCGTGGCAGGCTTTTGCTCCTGCCCTGCAGtaacagttagcctggtcccagatcagtttgtgctgatCAGTAGATTAGAGTGTGTTagagctagcctggtcccagatcagtttgtgctgatCAGTGAATTAGAGTGTGTTagagctagcctggtcccagatcagtttctGCTGATCAGTAGATTAGAGTGTGTTagagctagcctggtcccagattagTTTGTGCTGATCGGTAAATTAGAGTGTGTTagagctagcctggtcccaagatctgtttgtgctgtcttgctcATTTAGATTTGCGAAAGGCTATGTTAAGATTAGGGCTGGAGCAAAATCCTGCAGAACGGCTACCTCTCCAAAACCAACGATGGTCTCTATAAGGTCTATTATGAAATGTATATTATCAAATATATAATTATCTATAAACCACAGAATCTTCTTATAAATATTGCTGGTTTTCTCTCAATGTACATAAAAAAACACACAGGTTAATCACCCTTCTTGTATTCAATAACTTATCCCTAGAATTGCATTTTATTGTTATCATTGCAGACAAAAACCCAGCTGTTAACTTCACATTTTTGGTCAGATACACACATCATTGTTATAACAGTTGAATGCACAATGCATTTTTTATCTCTccattttatataaaaaaaatgaatgaaaataaagAATCTTTGGTGTTTATTAAAGCAAAAATAGAAtttaaaaaaagtctatataaaaAGGCATTAAAATATAATATGTAAATTACAAAGTAACACGTCAACAGATACAGCATGGCCAAGGAACTGAGAAATTCCAGCTTTGACTTTCATTAACAACTGTGTATAAAAAAAGAGGACAAATATGACCAAAAAAACATCATAAATTATGTTATAATCGAGAACGAGCCATTTTCTGGGTGCTTCCCGATCACTCACTCATACAATGAAAAGCATACCCACTGAGGTATTTCATCTTCAAATGACTCTGTCAAGCATTATGCACAATGGGAGTGAGACTTTAAAAGTGCATAGGACATTATGCACATCATCtctgtgtatctatgtggaaAAAACAGGATGTCCATTTGGTGGTTTTCCATTTGGCAAAACACATCACCAACAAGTGTTTTTTTACCTCATCATCATAATATTTCAGAAGGAAATATCTGTAGTTTCTTGTTGCAGTCAGTCACAGCAGCAATGATATCGCTCTTCTGGCATCGTCACTTCACGTCACCTGCCGAGAGTCCAACAATCAATGAGCAGTTTGAGATTCTTCACTTTGTAAACGTTGAGAGGGAGCATGTCTGCGTCTCGAACTGCACCCTGATCCGTAAAAAGTGTGTTACtttgttgaccagagccctgtatggaccctggtgaaaagtagtgcactatacaggaaatagagTGGCGTTTAAGATCCGATCGAGGAGTTtcagtggaggagggggaggaggaggaggaaaagaagaaGATGTCATACATCCAGCACCATATCATACTGCTGTTCTTTCTTCCTCTTGCCACATTTAGTGATCAGTACCATGTACAACGTCAAGAGCATGACCCAGTAGCTGGCGTACACTATCGCACCAACGATTAAGACTATCTTTTCAGAGTCTGGAAAAGGAAAATCTTTTCTGGTTTCCTGGACGACCGTATAGATAATGCCAAGGAAGAGGATGGTGAACCAGACCGATATGGGAACGAGCCCTACGAAGTTAGTCACGATCGTCTTCCTCCCTGACGTGCCCCAGCCAGCCTTGTTTATGGTGGCGATAGCGAACATCTTGGCCGGTAGCAGACTGGACATGTACAACACTGAGTAGAAGGACATGAAGACCATGACGATGTTGCCCCTCATGCAAGAGGCAAAGGAGGACTTGATGAGGGCGACCGCCTGGACGATCAACAGGAAGAGAAGGATATTCCAGATCCTCCCCTGGTAGAACAGCTGTATCGCCGTGGCAATGAGGAAGAAGGGGAAGAACCCGGTGATGACAGCCTCGTAGGTCATCCAGAGGTGGTGTTTGTGGAACCACATGGCGTTGTAGAGCCACTCTCTGAAGTAAGACTTACTCCACCGGGTCTGCTGGTTCAGCCAGCGCAGGTAGGTGATGGGGGTCTCGGTCAGGCACTTGGACCGGGCCGTGTACTTGGTGGCGTAGCCCAGGCTCAGCACGCGGTTGGTGAGGTGGCGGTCGTCGCCGAAGCTACAGTGGCTGCCCATGAATGTCTGGTTGTACCAATCCTCTATGAACTCGTGGAGCAGGTTGTTCCTGTACATTCCCAGTGGTCCGCTGATACACTGGACGCAGCCGAAGTAGGACTGACACGCTCGCTCGATGTTGAAGGCCATCCAGTAACGGACGCTGCTAAGAAACGAGATCCAGGACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122660 lncRNA upstream 23195 4784631 ~ 4785544 (+) True G107942
TU122648 lncRNA upstream 44267 4763291 ~ 4764472 (+) True G107932
TU122623 lncRNA upstream 71485 4735246 ~ 4737254 (+) True LOC118937361
TU122620 lncRNA upstream 74891 4731957 ~ 4733848 (+) True G107917
TU122611 lncRNA upstream 86449 4711544 ~ 4722290 (+) True G107912
TU122677 lncRNA downstream 8158 4819733 ~ 4820296 (+) True G107958
TU122686 lncRNA downstream 25808 4837383 ~ 4837938 (+) True G107965
TU122688 lncRNA downstream 27829 4839404 ~ 4840100 (+) True G107967
TU122775 lncRNA downstream 30497 4842072 ~ 4842349 (+) True G108031
TU122786 lncRNA downstream 38172 4849747 ~ 4849961 (+) True G108042
XR_005034656.1 mRNA upstream 71455 4735657 ~ 4737284 (+) False LOC118937361
XR_005034650.1 mRNA upstream 71456 4735657 ~ 4737283 (+) False LOC118937361
XR_005034653.1 mRNA upstream 71457 4735657 ~ 4737282 (+) False LOC118937361
XR_005034654.1 mRNA upstream 71457 4735657 ~ 4737282 (+) False LOC118937361
XR_005034655.1 mRNA upstream 71458 4735657 ~ 4737281 (+) False LOC118937361
XR_005034658.1 mRNA downstream 336526 5148101 ~ 5176987 (+) False LOC110506140
XM_036935645.1 mRNA downstream 336531 5148106 ~ 5176987 (+) True LOC110506140
XM_036935664.1 mRNA downstream 384356 5195931 ~ 5227041 (+) False tbc1d31
XM_036935658.1 mRNA downstream 384364 5195939 ~ 5227041 (+) True tbc1d31
XM_036935668.1 mRNA downstream 416482 5228057 ~ 5235894 (+) True LOC110520809
TU122634 other upstream 63153 4744168 ~ 4745586 (+) True G107922
TU120937 other upstream 670243 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 670243 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 781145 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 1008387 3639434 ~ 3800352 (+) True G106575
TU122792 other downstream 46336 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 324781 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 484604 5296179 ~ 5299933 (+) True G108354
TU123438 other downstream 694971 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 769718 5581293 ~ 5582450 (+) True LOC110506279

Expression Profile