RNA id: TU122901


Basic Information

Item Value
RNA id TU122901
length 236
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G108149
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4963870 ~ 4964105 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtaggtagattgggtgggctatttacagatggactatgtacagctgcagcgatcggttagctcctcagatagctgatgtttaaagttggtgagggaaattaaagtctccaacttcagtgggtgggtgttgttatcgtgtccagtgagctgagataaggcggaactttacctagcatagatttatagataacctggagccagtgggtctggctaCGAACAGCTAGCGAGGGCCAGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122891 lncRNA upstream 8088 4955448 ~ 4955782 (+) True G108139
TU122888 lncRNA upstream 11484 4951759 ~ 4952386 (+) True G108136
TU122832 lncRNA upstream 50517 4913054 ~ 4913353 (+) True G108084
TU122817 lncRNA upstream 75570 4888096 ~ 4888300 (+) True G108071
TU122816 lncRNA upstream 75777 4887868 ~ 4888093 (+) True G108070
TU122927 lncRNA downstream 20662 4984767 ~ 4984975 (+) True G108170
TU122949 lncRNA downstream 39751 5003856 ~ 5004116 (+) True G108189
TU122950 lncRNA downstream 40472 5004577 ~ 5004821 (+) True G108190
TU122952 lncRNA downstream 41165 5005270 ~ 5005557 (+) True G108192
TU122953 lncRNA downstream 43101 5007206 ~ 5007598 (+) True G108193
XR_005034656.1 mRNA upstream 226586 4735657 ~ 4737284 (+) False LOC118937361
XR_005034650.1 mRNA upstream 226587 4735657 ~ 4737283 (+) False LOC118937361
XR_005034653.1 mRNA upstream 226588 4735657 ~ 4737282 (+) False LOC118937361
XR_005034654.1 mRNA upstream 226588 4735657 ~ 4737282 (+) False LOC118937361
XR_005034655.1 mRNA upstream 226589 4735657 ~ 4737281 (+) False LOC118937361
XR_005034658.1 mRNA downstream 183996 5148101 ~ 5176987 (+) False LOC110506140
XM_036935645.1 mRNA downstream 184001 5148106 ~ 5176987 (+) True LOC110506140
XM_036935664.1 mRNA downstream 231826 5195931 ~ 5227041 (+) False tbc1d31
XM_036935658.1 mRNA downstream 231834 5195939 ~ 5227041 (+) True tbc1d31
XM_036935668.1 mRNA downstream 263952 5228057 ~ 5235894 (+) True LOC110520809
TU122792 other upstream 105596 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 152295 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 218284 4744168 ~ 4745586 (+) True G107922
TU120937 other upstream 825374 4137813 ~ 4138496 (+) False G106814
TU123045 other downstream 172251 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 332074 5296179 ~ 5299933 (+) True G108354
TU123438 other downstream 542441 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 617188 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 755860 5719965 ~ 5725579 (+) False G108682

Expression Profile