RNA id: TU123001


Basic Information

Item Value
RNA id TU123001
length 1378
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id G108241
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5079374 ~ 5081634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgatctctgtgTGTAGTGGATTTACAGTAATGAcatggagatgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgcagtgGGTTTACAGCAATtacacagaggtgtgtgtgtgtcctctgtgtgtAGTGGGTTTACAGCAATtacacagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtagtgggTTTACAACAATGacacaggggtgtgtgtgttctctgtgtgcaGTGTGTTTACAATAAGACGCAtaagtctgtgtgtgttctccctctctcctccatgagCAATTACAGAGTTATTTACTCTCATCAATCTCTGGTGGAAGAGCCTGCTATCTGATACACCACAGAACACCAGAACACTCCTCATCATAACGCTTATAGACAGAACCCTGGAGAATTCTTCGTGATTCAGGACTATTTCTCTCACATCTGTCCATTTGGAACCACAGAATTAATATTCCAGCTTTCATGTTCTAGAAGGTTTAACGAAAACACTTCCATCAAACTGAGTGAACAATTTGGCTTTTGTGTTGTTAAGTTTGTTTTACTTCCCAATAAGGAATGGCTGTCCTCCAACCATAGTAATCTATTGAGGTAAACTATGACTGTCCTACAACCATAGTAATCTATTGAGGTAAACTATGACTATCCTCCAACCATAGTAAACTATGACAGTCCTCCAACCATAGTAATCTATTGAGGTAAACTATGACTGTCCTCCAACCATAGTAAACTATTGAGGTAAACTATGACTGTCCTACAACCATAGTAAACTATGACTGTCCTCCAACCATAGTAATCTATTGAGGTAAACTATGACTGTCCTCCAACCATAGTAATCTATTGAGGTAAACTATGACTGTCCTCCAACCATAGTAATCTATTGAGGTAAACTATGACTGTCCTCCAACCATAGTAAACTATGACTGTCCTCCAACCATAGTAATCTATTGAGGTATACTATGACTGTCCTCCAACCATAGTAAACTATTCAGAACCCAACACAAGCTGAGCCAATTCAGATCACGTTGAGTGTGTCTGTCAAAGATCCATCATACAAAATACAGCGTGTTgtaggggccctggtcaaaggcagtgctctacatagggaatagggagccgtgTGGGACGCATTGAGGGAGAATAACAAGGGTGTGTGCTGTGTGATTCTGAGAAGGGTTTTCCAGAACCATGTTGTTCAATACCATAAACACTTTAAACTCTCCTTGACCTCCTTCAGAGAGCGGCCCAGTGACCCCATCCATTAACCTAGTTTAGTTCAGCCACGACCTCTTCACCACTctcacgcaagcacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122993 lncRNA upstream 25357 5053050 ~ 5054017 (+) True G108233
TU122981 lncRNA upstream 43108 5036024 ~ 5036266 (+) True G108221
TU122977 lncRNA upstream 51962 5027180 ~ 5027412 (+) True G108217
TU122974 lncRNA upstream 54424 5024708 ~ 5024950 (+) True G108214
TU122958 lncRNA upstream 67714 5010933 ~ 5011660 (+) True G108198
TU123013 lncRNA downstream 10242 5091876 ~ 5181746 (+) True G108250
TU123024 lncRNA downstream 15147 5096781 ~ 5097095 (+) True G108261
TU123025 lncRNA downstream 15908 5097542 ~ 5098886 (+) False G108262
TU123026 lncRNA downstream 15908 5097542 ~ 5098520 (+) True G108262
TU123046 lncRNA downstream 56030 5137664 ~ 5138358 (+) True G108281
XR_005034656.1 mRNA upstream 342090 4735657 ~ 4737284 (+) False LOC118937361
XR_005034650.1 mRNA upstream 342091 4735657 ~ 4737283 (+) False LOC118937361
XR_005034653.1 mRNA upstream 342092 4735657 ~ 4737282 (+) False LOC118937361
XR_005034654.1 mRNA upstream 342092 4735657 ~ 4737282 (+) False LOC118937361
XR_005034655.1 mRNA upstream 342093 4735657 ~ 4737281 (+) False LOC118937361
XR_005034658.1 mRNA downstream 66467 5148101 ~ 5176987 (+) False LOC110506140
XM_036935645.1 mRNA downstream 66472 5148106 ~ 5176987 (+) True LOC110506140
XM_036935664.1 mRNA downstream 114297 5195931 ~ 5227041 (+) False tbc1d31
XM_036935658.1 mRNA downstream 114305 5195939 ~ 5227041 (+) True tbc1d31
XM_036935668.1 mRNA downstream 146423 5228057 ~ 5235894 (+) True LOC110520809
TU122792 other upstream 221100 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 267799 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 333788 4744168 ~ 4745586 (+) True G107922
TU120937 other upstream 940878 4137813 ~ 4138496 (+) False G106814
TU123045 other downstream 54722 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 214545 5296179 ~ 5299933 (+) True G108354
TU123438 other downstream 424912 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 499659 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 638331 5719965 ~ 5725579 (+) False G108682

Expression Profile