RNA id: TU123127


Basic Information

Item Value
RNA id TU123127
length 2124
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G108334
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5238227 ~ 5240350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACGCCTTTTCGTCCAAATGTATTGTATTTTGTCCACAAAAcaagtaataaaatatatatttgtctaAATCAAGCCACAgcctaaaaaaaaaatcagtttgaTTTCAATTAAAAAGCATTGCAAAGTCTATGGCTCAGGGGACTAAAGCTTTTTCCACGGAGTTTTCAGCTCCATGGCTACTCTGTCTCAACATGAAAAATTCCTTGGTTTACCATAACGTTTGCAAATAAACTCTCTCACTTTTCCCAAAGCACCTCAACATATCCAGAAACCAAACATTGAGCCAAACATTCTTCTCATAGATAACTtaataaatacagtaggagaaAGGAGACTGGCTGACATGATCCATTATAGCTGTAGCTAGCAGAATAGTATGTTAAAAGACAGGTTCAAATATTGTGTGCGCACAATCTAATAGGAAAACTGTTAAAGCATGTATTAAAGTTATGTATTCAACGGTTGGTTATTAGTACTAAACAAGCACCTTTCTAAATATTGAGAAATAGcaaagaggacagacaggtaagAATTATTGTACTAGGATAAAAACAGTCATGTACTATGGTCACAATGTCACGTCTACTGTACAAAAAAAAGAGCAATGTGGATACATTGAGTTGCCAACTGAAGAAGGCAAAGAGccttcaaaaaatatatttttttacacattaACAGTAAAACACCATACAAGCTATTAGTTGAAGTTGAGAGACAGGATTAATCATAAATAAAGATTATAAAACCATTAAAAACAACTTTTCTAAGACAAGCACATAATGCTGTTTCATCTGCAGTCAGGTGATTATTTCATGCACTATATGGATCTCAACATTCAAATGCATCTTTTACCTTAACTATGGTACAAATAACTGTTCCTGCATGAAAACGTTAACGATTTCACAGCATAACATGCTGCCCAATTTGAAATGTTTATGATGAGCATGAGGTATCCAcgatcttctcctcctccacctcttctgtTGTCAAGTCTTGATGAAACCCTGCTCAGAAAGAATGAGCCATGCAGGCACATAGGTTTTGTCTCCTCAAAAAGGTTCCGAAGGTTCCATCCGTTTTTCTGTAAAATGTTGTGATGTTTCAACTAGATTCTAGATTGAGATTCTAGAACCAAAGTGACTAGAACTTGGTAAAGCATGTTTAGAATAGTTTGAGAGAACGTTGGTAACTCATCAGGTCCGAGCCAGGCTGGAACCCAGTGACCAGAGCATATAGGACATGGCTTACAGGTAAGCAACAATGTCTTGGTTCTACTAATGTGCACATGTCAAAACTTGTCATTTAAAATGACAGTTGAGGAGAGCATAGTCTGCAAACGTTGTAAAAATAAAAGCAAAACAAACGTGCATCTGATCATACATTAGAAAAACACTTTGAAAACAGCCCTGTATCAAGTCCTCCAACTCTAGTCTTCATACATACAAGTACTGCAGTCTTAAAAACAATAAAAGTTCTACGTAATTCAAACTCACGTTACACGTTTCCAAGTCAGCAGAGTTTCACATGATTGAAATAGGGACCCACATTGTGCCAGTTGGTTGGTGCAGGAAGCAGTAGGCCACATACAGACCATTGACCATTTTCATTTGTGTCATATCAACACCCAACTTTAGAATTGATCCACAAGGAGAGGGGTAAAGTCAATAAGGTGCATCCTCTTGAAAATATAATCATTTCAGAGGAGGACAATACAAGGCAGAATACTTAGTTCTACAGTGTTCAAAAAGAGCTCATATAGAAAGAGATTTGGTCTCTTAAAGCCATTACAAGGTCAAAGGGATATAAGGTGCCTAATCAAAGTTGTTTCCCCCCACAAGAACATGTTAAAGAGATTCTCCGGAACtttttgtatacattttagccagtagttctgaaagtagagTTCAGCTAAATTGTGAACTACCTCACATCACTGGCATAGAACACAGAGACCTTGCGAGGGGGGCTCTGAACACTGACACGTCCAGTCCAAAGCaagaggtttaaaaaaatacttggTAGTCGCAAAAgttccggagcatgtctttaatacAGTAGTGGGCAAAGTGCACAATAATAAGTGCTACACTGTCAGTTTCCTGCAGACAccacagtatacagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123118 lncRNA upstream 12097 5225206 ~ 5226130 (+) True G108332
TU123115 lncRNA upstream 13971 5223607 ~ 5224256 (+) False G108331
TU123117 lncRNA upstream 13971 5223607 ~ 5224256 (+) True G108331
TU123116 lncRNA upstream 14142 5223607 ~ 5224085 (+) False G108331
TU123114 lncRNA upstream 15530 5221868 ~ 5222697 (+) True G108330
TU123129 lncRNA downstream 261 5240611 ~ 5241683 (+) True G108336
TU123125 lncRNA downstream 9363 5249713 ~ 5254032 (+) True G108333
TU123089 lncRNA downstream 43278 5283628 ~ 5285729 (+) False LOC118937366
TU123088 lncRNA downstream 44657 5285007 ~ 5285729 (+) True LOC118937366
TU123162 lncRNA downstream 93403 5333753 ~ 5334485 (+) True G108361
XM_036935668.1 mRNA upstream 2333 5228057 ~ 5235894 (+) True LOC110520809
XM_036935664.1 mRNA upstream 11186 5195931 ~ 5227041 (+) False tbc1d31
XM_036935658.1 mRNA upstream 11186 5195939 ~ 5227041 (+) True tbc1d31
XR_005034658.1 mRNA upstream 61240 5148101 ~ 5176987 (+) False LOC110506140
XM_036935645.1 mRNA upstream 61240 5148106 ~ 5176987 (+) True LOC110506140
XM_021587149.2 mRNA downstream 33806 5274156 ~ 5275584 (+) True mrpl32
XR_005034673.1 mRNA downstream 43344 5283694 ~ 5285741 (+) False LOC118937366
XM_021595380.2 mRNA downstream 65926 5306276 ~ 5310035 (+) True ccdc127a
XM_036935725.1 mRNA downstream 81204 5321554 ~ 5349672 (+) False phf20l1
XM_036935729.1 mRNA downstream 81204 5321554 ~ 5349672 (+) False phf20l1
TU123045 other upstream 101235 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 379953 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 426652 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 492641 4744168 ~ 4745586 (+) True G107922
TU120940 other upstream 1099731 4137813 ~ 4138496 (+) True G106814
TU123151 other downstream 55829 5296179 ~ 5299933 (+) True G108354
TU123438 other downstream 266196 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 340943 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 479615 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 479615 5719965 ~ 5725382 (+) True G108682

Expression Profile