RNA id: TU123301


Basic Information

Item Value
RNA id TU123301
length 1047
RNA type TUCP
GC content 0.45
exon number 1
gene id G108477
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5240618 ~ 5241664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctcaaccaggttcatgaggttgtcacctggaatgcatttcaattaacaggtgtgccttgttcaagtaatttgtggaatttctttccttaatgtgtttgagccaatcagttgtgttgtgacaaggtaggggtggtatacagaagaaaatacagagtccatattatgtcaagaacagctcaaataagcaaacagaagtgacagtccattactttaagacatgaaggtcagtaaatccGGAAAGTTTTCACGCTtcgcaaaaacaatcaagtgctatgatgaaactggctctcatgaggattgccacaggaaaggaagacccagagttacctctggtgcagaggataagttcatttgagttaactgcacctcagattgcagtccaaataaatgcttcaccgagttcaagtaacagacgcatctcaacatcaactgttcagaggggactgcgtgaatcaggccttcatggtcaaattgctgcgaagaaaccactactagaggacaccaataagaaaaagagacttgctcgtgtttcctggcccaagcaatggacattaattagaccggtggaaatctgtcctttggtctgtaggccaaatgtttgatttttggttccaaccgccgtgtctttgtgagacgcaaagtaggtgaatggatgatctctgcattgtgtagttcccaccgtgaagcatggaggaggaggtgtggggggtgCTTAGCTGGTGAcactctgtgatttatttagaattcaaggcacacttaactagcatggctaccacagcattctgcagcgatacgccatcccatctggtttgggcttagtgggactatcatttgtttttcaacaggacaatgacccaacacaccttcaggctgtgtaagggctatttgaccgagaaggagagtgatgtagtgttgcatcagatgacctggcctccacaatcacccaacctcaacccaattgagatggtttggaatgatttggactgcagagtgaaggaaaagcagccaactagtgctcagcatatgtgggaactctttcaagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123297 lncRNA downstream 275 5238193 ~ 5240343 (-) True G108473
TU123292 lncRNA downstream 33652 5206521 ~ 5206966 (-) True G108468
TU123249 lncRNA downstream 87699 5151779 ~ 5152919 (-) True G108436
TU123242 lncRNA downstream 101991 5138250 ~ 5138627 (-) True G108429
TU123237 lncRNA downstream 111472 5125194 ~ 5129146 (-) True G108425
TU123341 lncRNA upstream 96349 5338013 ~ 5349664 (-) True G108511
TU123347 lncRNA upstream 111836 5353500 ~ 5353758 (-) True G108517
TU123353 lncRNA upstream 116385 5358049 ~ 5359185 (-) True G108522
TU123357 lncRNA upstream 118033 5359697 ~ 5360054 (-) True G108523
TU123362 lncRNA upstream 123529 5365193 ~ 5365409 (-) True G108528
XM_021598299.2 mRNA downstream 2531 5235925 ~ 5238087 (-) True zgc:101716
XM_036935651.1 mRNA downstream 45158 5180588 ~ 5195460 (-) True derl1
XM_036961544.1 mRNA downstream 76018 5142929 ~ 5164600 (-) True LOC118944032
XM_036934579.1 mRNA downstream 172506 5066972 ~ 5068112 (-) True LOC118936926
XM_036935639.1 mRNA downstream 399216 4808713 ~ 4841402 (-) True has2
XM_036935693.1 mRNA upstream 301 5241965 ~ 5248382 (-) True LOC110520807
XM_036935677.1 mRNA upstream 6815 5248479 ~ 5262214 (-) False LOC110520837
XM_036935681.1 mRNA upstream 6815 5248479 ~ 5262214 (-) False LOC110520837
XM_036935688.1 mRNA upstream 6815 5248479 ~ 5262214 (-) True LOC110520837
XM_036935709.1 mRNA upstream 26468 5268132 ~ 5274197 (-) True LOC110507251
TU122777 other downstream 396527 4843061 ~ 4844091 (-) True G108033
TU122481 other downstream 688653 4550313 ~ 4551965 (-) True G107849
TU122474 other downstream 700995 4539235 ~ 4539623 (-) True G107843
TU122340 other downstream 864195 4375922 ~ 4376423 (-) True G107755
TU122094 other downstream 940388 4297445 ~ 4300230 (-) False G107576
TU124209 other upstream 180833 5422497 ~ 5430757 (-) True LOC110520858
TU124444 other upstream 596013 5837677 ~ 5840273 (-) True G109302
TU124426 other upstream 619905 5861569 ~ 5862730 (-) True atxn1b
TU124406 other upstream 641318 5882982 ~ 5886155 (-) False G109273
TU124410 other upstream 641318 5882982 ~ 5886155 (-) False G109273

Expression Profile