RNA id: TU123151


Basic Information

Item Value
RNA id TU123151
length 1292
RNA type TUCP
GC content 0.45
exon number 5
gene id G108354
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5296179 ~ 5299933 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACACATTTGAAATAATACACAGAACATAAGAACAAAGCAAATATAAATTAATTCTTGGTAACATACATAGTATTTCATTTATTTCCCCCTTCCTAATTGTCTTAATGTCCACTATATTCCACCAGTAAATAGCACAAAGACAACTAGGGTTGAGAATATTTTTAAATATTGCCATAAAGTGCATAACCTGTAGCAAGCAGAGTGAAATCAAACATCCCATCAAATATTGCTGGTTACACGCCAGGTCTACACATGAATTTATCCTGACAGGATAATCATTAAAGACGATGTGTTAATGACTCTGAAGGGACATCTACAGGAAATAGGACGTCTCAGCACTCTGAACTACAACGATTACACAACATTAAAATTCAGTTTTCCATTCAGAGTCCTAATATTATGGTATCAGTGGATAATAAAGGCCACAGAGAATGGGAGTATTTAGGTAACTACATACCTATAGGGAAACTACTCTACGACTTCATATGACAACAGACAATTAGaaaacagttctatatttacaCACTTCAATCACAATACCTTAACAATTCCTTTGCTTGCAGTGTCGACTACAATATGTGGGTTGAAAGTCAAACTGCATGTGAGACAGCAATAATTCCCTATCTACAGTGCTCCCTCACACAGAGTGAAGGCCACACAGTGAAATGCATCCTAGGTGGGTGTTGCTGGAAGCGTACAGACTGACAATAATAAATAAGTGTTCCTGTTGAGATGGTCTCAATAGGAGCGGATGGCTGGAGGGACGGCTGAACATTCCCCCTGGTCCAGAGAGGTGTCAATCACTGGTCGGTACTCCAGAGTTACCTCGCCAGTCTTGGGATCCACAGTGGACATGGTGTGTTTTCTCCAATGCTGTTCGAAAGGCTTCCTCTCCTGTCCTGCCAGAGGCCTGGCGTAGTCCAGCTCATCCATACGGTCCTTGTAGTCCTCCCGGGCGTGTGCTCCCCTGGTCTCCTTGCGGGCCTCGGCAGAGTGGATAGTCTGGACCGCGTTCAGCATCAGGTTCTGCAGCTCCAGAGACTCGACCAGGTCAGTGTTCCACACCATACCACGGTCGAATGTCTTGATGTCCTCCATGGTCTGGTAGATGGCGTCCATCTTGTCACATCCCTCCTTCAGAACGTCGCCGGTACGGAACACTGCTGCATGGGTCTGCATCGTTCTCTGCATGTTGAGTCTGATCTCAGAGGTTCTGGTGTTCCCGTCAGCAAACCTGATCTTGTCCAGGTTGGCCACAGACTCCTCTCCAGCACTGGGCTTCAGTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123089 lncRNA upstream 10450 5283628 ~ 5285729 (+) False LOC118937366
TU123088 lncRNA upstream 10450 5285007 ~ 5285729 (+) True LOC118937366
TU123125 lncRNA upstream 42147 5249713 ~ 5254032 (+) True G108333
TU123129 lncRNA upstream 54496 5240611 ~ 5241683 (+) True G108336
TU123127 lncRNA upstream 55829 5238227 ~ 5240350 (+) True G108334
TU123162 lncRNA downstream 33820 5333753 ~ 5334485 (+) True G108361
TU123363 lncRNA downstream 65898 5365831 ~ 5366530 (+) True G108529
TU123399 lncRNA downstream 75575 5375508 ~ 5376125 (+) False tg
TU123400 lncRNA downstream 80145 5380078 ~ 5380438 (+) True G108547
TU123402 lncRNA downstream 91489 5391422 ~ 5391666 (+) True G108549
XR_005034673.1 mRNA upstream 10438 5283694 ~ 5285741 (+) False LOC118937366
XM_021587149.2 mRNA upstream 20595 5274156 ~ 5275584 (+) True mrpl32
XM_036935668.1 mRNA upstream 60285 5228057 ~ 5235894 (+) True LOC110520809
XM_036935664.1 mRNA upstream 69138 5195931 ~ 5227041 (+) False tbc1d31
XM_036935658.1 mRNA upstream 69138 5195939 ~ 5227041 (+) True tbc1d31
XM_021595380.2 mRNA downstream 6343 5306276 ~ 5310035 (+) True ccdc127a
XM_036935725.1 mRNA downstream 21621 5321554 ~ 5349672 (+) False phf20l1
XM_036935729.1 mRNA downstream 21621 5321554 ~ 5349672 (+) False phf20l1
XM_036935735.1 mRNA downstream 21621 5321554 ~ 5349672 (+) False phf20l1
XM_036935741.1 mRNA downstream 21621 5321554 ~ 5349672 (+) False phf20l1
TU123045 other upstream 159187 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 437905 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 484604 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 550593 4744168 ~ 4745586 (+) True G107922
TU120937 other upstream 1157683 4137813 ~ 4138496 (+) False G106814
TU123438 other downstream 206613 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 281360 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 420032 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 420032 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 480281 5780214 ~ 5782644 (+) True G108702

Expression Profile