RNA id: TU123162


Basic Information

Item Value
RNA id TU123162
length 239
lncRNA type intronic
GC content 0.40
exon number 3
gene id G108361
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5333753 ~ 5334485 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttttatactgtctcctctgtcccctcagggccatatgttttatactgtctcctctgtcccctcagggccatatgttttatatgttttatactgtctcCTCTGGgccatgttttatactgtctcctctgtcccctcagggCCATATGTtttatatgttttatactgtctcctctgtcccctcagggccatatgttttatactgtctcctctgtcccctcagggCCATAGGTTTTATAcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123089 lncRNA upstream 48024 5283628 ~ 5285729 (+) False LOC118937366
TU123088 lncRNA upstream 48024 5285007 ~ 5285729 (+) True LOC118937366
TU123125 lncRNA upstream 79721 5249713 ~ 5254032 (+) True G108333
TU123129 lncRNA upstream 92070 5240611 ~ 5241683 (+) True G108336
TU123127 lncRNA upstream 93403 5238227 ~ 5240350 (+) True G108334
TU123363 lncRNA downstream 31346 5365831 ~ 5366530 (+) True G108529
TU123399 lncRNA downstream 41023 5375508 ~ 5376125 (+) False tg
TU123400 lncRNA downstream 45593 5380078 ~ 5380438 (+) True G108547
TU123402 lncRNA downstream 56937 5391422 ~ 5391666 (+) True G108549
TU123404 lncRNA downstream 63852 5398337 ~ 5398594 (+) True G108551
XM_021595380.2 mRNA upstream 23718 5306276 ~ 5310035 (+) True ccdc127a
XR_005034673.1 mRNA upstream 48012 5283694 ~ 5285741 (+) False LOC118937366
XM_021587149.2 mRNA upstream 58169 5274156 ~ 5275584 (+) True mrpl32
XM_036935668.1 mRNA upstream 97859 5228057 ~ 5235894 (+) True LOC110520809
XM_036935664.1 mRNA upstream 106712 5195931 ~ 5227041 (+) False tbc1d31
XM_036961549.1 mRNA downstream 13767 5348252 ~ 5447200 (+) False tg
XM_021598289.2 mRNA downstream 117014 5451499 ~ 5457130 (+) True ccn4b
XM_036935926.1 mRNA downstream 146490 5480975 ~ 5542867 (+) False ptp4a3b
XM_036935931.1 mRNA downstream 172055 5506540 ~ 5542867 (+) False ptp4a3b
XM_036935869.1 mRNA downstream 208509 5542994 ~ 5572618 (+) False dync1i1
TU123151 other upstream 33820 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 196761 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 475479 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 522178 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 588167 4744168 ~ 4745586 (+) True G107922
TU123438 other downstream 172061 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 246808 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 385480 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 385480 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 445729 5780214 ~ 5782644 (+) True G108702

Expression Profile