RNA id: TU123402


Basic Information

Item Value
RNA id TU123402
length 245
lncRNA type intronic
GC content 0.41
exon number 1
gene id G108549
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5391422 ~ 5391666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCATCCAATGTATATGATTGGGGATAGACGTTTACATACATGTGTCTCGTCTCTCATCTATCAGTACATTAAGATGTACAGACAGATTCTGTTATGACAGCTGCATGTCATCTCTACTGCTCTTAAAGATCTCTGAACACAGACAGTTGTAATATACACACTACAGGTGGTTGCTGAGGGGacaacggctcataataacgtccagaacagagcaaatgaaatggtgtcaaacacctggaaacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123400 lncRNA upstream 10984 5380078 ~ 5380438 (+) True G108547
TU123399 lncRNA upstream 15297 5375508 ~ 5376125 (+) False tg
TU123363 lncRNA upstream 24892 5365831 ~ 5366530 (+) True G108529
TU123162 lncRNA upstream 56937 5333753 ~ 5334485 (+) True G108361
TU123089 lncRNA upstream 105693 5283628 ~ 5285729 (+) False LOC118937366
TU123404 lncRNA downstream 6671 5398337 ~ 5398594 (+) True G108551
TU123395 lncRNA downstream 7245 5398911 ~ 5399364 (+) True tg
TU123407 lncRNA downstream 9890 5401556 ~ 5401846 (+) True G108554
TU123396 lncRNA downstream 26732 5418398 ~ 5419781 (+) True G108543
TU123424 lncRNA downstream 67840 5459506 ~ 5460437 (+) False G108567
XM_036935752.1 mRNA upstream 41750 5321554 ~ 5349672 (+) False phf20l1
XM_021598289.2 mRNA downstream 59833 5451499 ~ 5457130 (+) True ccn4b
XM_036935926.1 mRNA downstream 89309 5480975 ~ 5542867 (+) False ptp4a3b
XM_036935931.1 mRNA downstream 114874 5506540 ~ 5542867 (+) False ptp4a3b
XM_036935869.1 mRNA downstream 151328 5542994 ~ 5572618 (+) False dync1i1
XM_036935874.1 mRNA downstream 151328 5542994 ~ 5572618 (+) False dync1i1
TU123151 other upstream 91489 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 254430 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 533148 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 579847 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 645836 4744168 ~ 4745586 (+) True G107922
TU123438 other downstream 114880 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 189627 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 328299 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 328299 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 388548 5780214 ~ 5782644 (+) True G108702

Expression Profile