RNA id: TU123396


Basic Information

Item Value
RNA id TU123396
length 540
lncRNA type intronic
GC content 0.51
exon number 2
gene id G108543
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5418398 ~ 5419781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagatacATCTCTGCTGATGGTGTGTTCTTTGATGATGGTGTGTTCTGTGCTGATGGTGTGTTCTGTGCTGATGGTGTGTTCTGTGCTGATGGTGTGTTCTGTGCTGATGGTGTGTTCTGTGCTGATGGTGTGTTCTGTGCTGATGGTGTGTTCTGTGCTGATGTGGCACTGAGAGGGAGGAGCGACTCTCTCCacagtcagctagccagccatAGCACACAGCTGGCACACTCACAGACATGTggaaggactgtgtgtgtgtgttcaagttTCAACTTTATTATCCTAGACGGCACGTTCTGTTTTAGAGTGATGTGTAGTCTTGGTGATAGGAGCCCTCAGCCAGCAACTCTGGAAGACCCTGCAACACAGCCACACCTCTAAACCACTGGCCCCTCCCAGACAGCCCTTCTTTCAAGCCCTGCAACACAGCAACACCTACTAAACCACTGCCCCTCCCACACAGCCCCTCTATAAAGCCCTGCAACACCTACTAAACCACTGGCCCCTCCCAGACAGCTCTTCTATAAAGCCCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123407 lncRNA upstream 16552 5401556 ~ 5401846 (+) True G108554
TU123395 lncRNA upstream 19034 5398911 ~ 5399364 (+) True tg
TU123404 lncRNA upstream 19804 5398337 ~ 5398594 (+) True G108551
TU123402 lncRNA upstream 26732 5391422 ~ 5391666 (+) True G108549
TU123400 lncRNA upstream 37960 5380078 ~ 5380438 (+) True G108547
TU123424 lncRNA downstream 39725 5459506 ~ 5460437 (+) False G108567
TU123423 lncRNA downstream 40019 5459800 ~ 5460437 (+) True G108567
TU123461 lncRNA downstream 72210 5491991 ~ 5492744 (+) True G108598
TU123472 lncRNA downstream 88657 5508438 ~ 5509164 (+) True G108608
TU123480 lncRNA downstream 106923 5526704 ~ 5529066 (+) True G108613
XM_036935752.1 mRNA upstream 68726 5321554 ~ 5349672 (+) False phf20l1
XM_021598289.2 mRNA downstream 31718 5451499 ~ 5457130 (+) True ccn4b
XM_036935926.1 mRNA downstream 61194 5480975 ~ 5542867 (+) False ptp4a3b
XM_036935931.1 mRNA downstream 86759 5506540 ~ 5542867 (+) False ptp4a3b
XM_036935869.1 mRNA downstream 123213 5542994 ~ 5572618 (+) False dync1i1
XM_036935874.1 mRNA downstream 123213 5542994 ~ 5572618 (+) False dync1i1
TU123151 other upstream 118465 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 281406 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 560124 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 606823 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 672812 4744168 ~ 4745586 (+) True G107922
TU123438 other downstream 86765 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 161512 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 300184 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 300184 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 360433 5780214 ~ 5782644 (+) True G108702

Expression Profile