RNA id: TU123461


Basic Information

Item Value
RNA id TU123461
length 210
lncRNA type intronic
GC content 0.52
exon number 2
gene id G108598
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5491991 ~ 5492744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGGACATTACTGCCACACACAAGGGGGGACATTACTGCCACACACAAGGGGGGACATTACTGCCACACACAAGGGGGGACATTACTGCCACACACAAGGGGGACATTACTGCCACACACAAGGGTTACATTACTGCCACACACAAGGGTTACATTACTGCCACACACAAGGGGTACATTACTGCCACACACAAGGGTTACATTACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123424 lncRNA upstream 31554 5459506 ~ 5460437 (+) False G108567
TU123423 lncRNA upstream 31554 5459800 ~ 5460437 (+) True G108567
TU123396 lncRNA upstream 72210 5418398 ~ 5419781 (+) True G108543
TU123407 lncRNA upstream 90145 5401556 ~ 5401846 (+) True G108554
TU123395 lncRNA upstream 92627 5398911 ~ 5399364 (+) True tg
TU123472 lncRNA downstream 15694 5508438 ~ 5509164 (+) True G108608
TU123480 lncRNA downstream 33960 5526704 ~ 5529066 (+) True G108613
TU123482 lncRNA downstream 37218 5529962 ~ 5532458 (+) True G108615
TU123483 lncRNA downstream 40243 5532987 ~ 5534119 (+) True G108616
TU123445 lncRNA downstream 80707 5573451 ~ 5575009 (+) True G108583
XM_021598289.2 mRNA upstream 34861 5451499 ~ 5457130 (+) True ccn4b
XM_036961549.1 mRNA upstream 44791 5348252 ~ 5447200 (+) False tg
XM_036935765.1 mRNA upstream 142319 5321554 ~ 5349672 (+) False phf20l1
XM_036935931.1 mRNA downstream 13796 5506540 ~ 5542867 (+) False ptp4a3b
XM_036935869.1 mRNA downstream 50250 5542994 ~ 5572618 (+) False dync1i1
XM_036935874.1 mRNA downstream 50250 5542994 ~ 5572618 (+) False dync1i1
XM_036935879.1 mRNA downstream 50250 5542994 ~ 5572618 (+) False dync1i1
XM_036935882.1 mRNA downstream 50250 5542994 ~ 5572618 (+) False dync1i1
TU123151 other upstream 192058 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 354999 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 633717 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 680416 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 746405 4744168 ~ 4745586 (+) True G107922
TU123438 other downstream 13802 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 88549 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 227221 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 227221 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 287470 5780214 ~ 5782644 (+) True G108702

Expression Profile