RNA id: TU123472


Basic Information

Item Value
RNA id TU123472
length 423
lncRNA type intronic
GC content 0.39
exon number 3
gene id G108608
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5508438 ~ 5509164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTAAACAGTAGGCTGCAACCTCATCCTTATTACATTTAAACGGTAGGCTGCAGTATGTTACAGTATGTCTCTACAGGTGAAACAACACTGCCAGGTTACAGTATGTCTCTACAGATAAAACAACACTGCTAGGTTACAGTATGTCTCTACAGGTAAAACAACACTACCAGGTTACAGTATGTCTCTACAGGTAAAACAACACTACTAGGTTACAGTATGTCTCTACAGGTAAAACAACACTACTAGGTTACAGTATGTCTCTACAGGTAAAACAACACTACCAGGTTACAGTATGTCTCTACAGGTAAAACAACACTACCAGGTTACAGTATGTCTCTACAGGTAAAACAACACTACTAGGTTACAGTATGTCTCTACAGGTGAAACAACACTACCAGGTTACAGTATGTCTCTACAGGT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123461 lncRNA upstream 15694 5491991 ~ 5492744 (+) True G108598
TU123424 lncRNA upstream 48001 5459506 ~ 5460437 (+) False G108567
TU123423 lncRNA upstream 48001 5459800 ~ 5460437 (+) True G108567
TU123396 lncRNA upstream 88657 5418398 ~ 5419781 (+) True G108543
TU123407 lncRNA upstream 106592 5401556 ~ 5401846 (+) True G108554
TU123480 lncRNA downstream 17540 5526704 ~ 5529066 (+) True G108613
TU123482 lncRNA downstream 20798 5529962 ~ 5532458 (+) True G108615
TU123483 lncRNA downstream 23823 5532987 ~ 5534119 (+) True G108616
TU123445 lncRNA downstream 64287 5573451 ~ 5575009 (+) True G108583
TU123450 lncRNA downstream 91499 5600663 ~ 5602911 (+) True G108588
XM_021598289.2 mRNA upstream 51308 5451499 ~ 5457130 (+) True ccn4b
XM_036961549.1 mRNA upstream 61238 5348252 ~ 5447200 (+) False tg
XM_036935765.1 mRNA upstream 158766 5321554 ~ 5349672 (+) False phf20l1
XM_036935869.1 mRNA downstream 33830 5542994 ~ 5572618 (+) False dync1i1
XM_036935874.1 mRNA downstream 33830 5542994 ~ 5572618 (+) False dync1i1
XM_036935879.1 mRNA downstream 33830 5542994 ~ 5572618 (+) False dync1i1
XM_036935882.1 mRNA downstream 33830 5542994 ~ 5572618 (+) False dync1i1
XM_036935886.1 mRNA downstream 33830 5542994 ~ 5572618 (+) False dync1i1
TU123151 other upstream 208505 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 371446 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 650164 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 696863 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 762852 4744168 ~ 4745586 (+) True G107922
TU123443 other downstream 72129 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 210801 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 210801 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 271050 5780214 ~ 5782644 (+) True G108702
TU123653 other downstream 391347 5900511 ~ 5900950 (+) True G108733

Expression Profile