RNA id: TU123480


Basic Information

Item Value
RNA id TU123480
length 316
lncRNA type intronic
GC content 0.36
exon number 2
gene id G108613
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5526704 ~ 5529066 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtacaccacctctagattcagttcagttcatcaggcagtatgtacaccacctccagattcagttcagttcatcaggcagtatgtacaccacctctagattcagttcagttcatcaggcagtatgtacaccacctccagattcagttcagttcatcaggcagtatgtacaccacctctagattcagttcagttcatcaggcagtatgaacacctcacctctagattcagttcatcaggcagtatgtacacctcacctccagattcagttcatcaggcagtatgtacacctcacctccagattcagttcatcaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123472 lncRNA upstream 17540 5508438 ~ 5509164 (+) True G108608
TU123461 lncRNA upstream 33960 5491991 ~ 5492744 (+) True G108598
TU123424 lncRNA upstream 66267 5459506 ~ 5460437 (+) False G108567
TU123423 lncRNA upstream 66267 5459800 ~ 5460437 (+) True G108567
TU123396 lncRNA upstream 106923 5418398 ~ 5419781 (+) True G108543
TU123482 lncRNA downstream 896 5529962 ~ 5532458 (+) True G108615
TU123483 lncRNA downstream 3921 5532987 ~ 5534119 (+) True G108616
TU123445 lncRNA downstream 44385 5573451 ~ 5575009 (+) True G108583
TU123450 lncRNA downstream 71597 5600663 ~ 5602911 (+) True G108588
TU123446 lncRNA downstream 75917 5604983 ~ 5606316 (+) True G108584
XM_021598289.2 mRNA upstream 69574 5451499 ~ 5457130 (+) True ccn4b
XM_036961549.1 mRNA upstream 79504 5348252 ~ 5447200 (+) False tg
XM_036935765.1 mRNA upstream 177032 5321554 ~ 5349672 (+) False phf20l1
XM_036935869.1 mRNA downstream 13928 5542994 ~ 5572618 (+) False dync1i1
XM_036935874.1 mRNA downstream 13928 5542994 ~ 5572618 (+) False dync1i1
XM_036935879.1 mRNA downstream 13928 5542994 ~ 5572618 (+) False dync1i1
XM_036935882.1 mRNA downstream 13928 5542994 ~ 5572618 (+) False dync1i1
XM_036935886.1 mRNA downstream 13928 5542994 ~ 5572618 (+) False dync1i1
TU123151 other upstream 226771 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 389712 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 668430 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 715129 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 781118 4744168 ~ 4745586 (+) True G107922
TU123443 other downstream 52227 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 190899 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 190899 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 251148 5780214 ~ 5782644 (+) True G108702
TU123653 other downstream 371445 5900511 ~ 5900950 (+) True G108733

Expression Profile