RNA id: TU123445


Basic Information

Item Value
RNA id TU123445
length 1559
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G108583
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5573451 ~ 5575009 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAGAACCGTAGTTCGCTACCTAGTAATCCATGTTTACGTTTAATATTGTGAAGCTACTTGTCGGCCTTTCTCCAGTTTACTTCTGCCCGTGTTAGCGTGCTAGCTTTGTGCTTGATTGCACTCTGCAGAGGTTAGCAGCACTAGCGGTAGCAAGCAGTACAAGTTCGTTTCGTTCTTTTAAAAACCACATATATTAAAGTCAAGCTAGCTTCTCTATTTTCTCGGAAGCTTGTTCTAATGCCGATTGAATTTATCAAATGCTATAACTATATTTTTTGTTACCTAATGTTCCTAACTAGCTTGTTTTTATACTTATGATGTAGCAGGGTtctgaaaaaaatgtaataatgcaGATAAAGATTTGAAATTGAATGTTTTTCACACAACCCAGGTTCTGAGTTAGTTACACCATTATTCTGGCAGATCGTTGAAATCCAACGTCTATCCAACGCCATCTCTGCTGTTTCTAAAATGACACCGTATGAGGGAGACATAGTCAATGGAATAACAACACTGAATGTTGTAATATATGGATAGATAAACTTGTCAGTATTGTCTTATTTGACTTGTTCATGTTTTCTCACAGCCCTGTAGGGGGCGACCAAGGTCAAAGTTCAATTTCAATTTCCTTAGCTGCTATTGTCAGTGACAGACTGCATACAGTAGTATCATCTTTACAGATATGTTCAGTGTGTTGTCAAGATTGGTTGCCTGGTACTGTAAACATCCCCGACTGGAAGCTGTGATGTACATGTTCTAGCTTTCAGTAGGGTGTTTGCTGCTCCATTCTTCCACAGACTCCTAGACCAGTGTTGTTGTTTGTAGAtttagggctgcattccagtcaAAATTAGCaccttctcttcctcccatcACTTGGAGTAAACCCTCCAGTGATGTATGTATGGTGAAGTGGAAGAGGGAAGCAGTTGCAAGTAAAAGTGGATTTGGACCACGggaggctactgaggggaggatggctcataataatggccagaactgcatgaatggaatggcatacctttcatgtatttgataccattctgctccagccattaccacaagcctgtcctaccctattaagatgccaccaacctcaGGTTTGCATCTGCATTTAAATAACTGAATGTTATTGTTTGTACATCTGGTGTTTCCCAGACACAAGTGTGTCTGACTCAAGTGAGTGTGCTTTACTTCCAGTTCTACTGCTGAGGAAATGGAAGTATCCTAGCTTCTCCATTCTGAGTATAGTTACTGTAAACATCCTACACTCAGCTAAAGCCTGTATGGAAGGCTGGGGAGAGGGTGTTTACTTTGGCTGGCTTGGACAGCTTCAATCTGCATGGATGGGATTTAATGGATCACTCATGACGAGATGGAAAGCTTTATTTTTGTATGAACAGAGAAGGCTGCAATTGATTCCCATTGGTAGTTTTTTTTAATGAGAAACCTAACATGTAGAAAATGCAATCAATGGATGATATTTGGATGCATTGTCACCGATCAATAATGACAATACTGTTTGTTATTGCAAAAAATTAAACTTTGCAAAtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123483 lncRNA upstream 39332 5532987 ~ 5534119 (+) True G108616
TU123482 lncRNA upstream 40993 5529962 ~ 5532458 (+) True G108615
TU123480 lncRNA upstream 44385 5526704 ~ 5529066 (+) True G108613
TU123472 lncRNA upstream 64287 5508438 ~ 5509164 (+) True G108608
TU123461 lncRNA upstream 80707 5491991 ~ 5492744 (+) True G108598
TU123450 lncRNA downstream 25654 5600663 ~ 5602911 (+) True G108588
TU123446 lncRNA downstream 29974 5604983 ~ 5606316 (+) True G108584
TU123488 lncRNA downstream 37407 5612416 ~ 5613037 (+) True G108621
TU123489 lncRNA downstream 38576 5613585 ~ 5614123 (+) True G108622
TU123490 lncRNA downstream 39212 5614221 ~ 5614705 (+) True G108623
XM_036935869.1 mRNA upstream 833 5542994 ~ 5572618 (+) False dync1i1
XM_036935874.1 mRNA upstream 833 5542994 ~ 5572618 (+) False dync1i1
XM_036935879.1 mRNA upstream 833 5542994 ~ 5572618 (+) False dync1i1
XM_036935882.1 mRNA upstream 833 5542994 ~ 5572618 (+) False dync1i1
XM_036935886.1 mRNA upstream 833 5542994 ~ 5572618 (+) False dync1i1
XM_036935852.1 mRNA downstream 357 5575366 ~ 5590651 (+) False LOC110506279
XR_005034680.1 mRNA downstream 357 5575366 ~ 5590752 (+) False LOC110506279
XR_005034681.1 mRNA downstream 358 5575367 ~ 5590752 (+) False LOC110506279
XM_036935845.1 mRNA downstream 370 5575379 ~ 5592253 (+) False LOC110506279
XM_036935846.1 mRNA downstream 372 5575381 ~ 5592253 (+) False LOC110506279
TU123438 other upstream 30586 5506546 ~ 5542865 (+) True ptp4a3b
TU123151 other upstream 273518 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 436459 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 715177 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 761876 4808739 ~ 4811575 (+) True G107955
TU123443 other downstream 6284 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 144956 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 144956 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 205205 5780214 ~ 5782644 (+) True G108702
TU123653 other downstream 325502 5900511 ~ 5900950 (+) True G108733

Expression Profile