RNA id: TU123488


Basic Information

Item Value
RNA id TU123488
length 563
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G108621
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5612416 ~ 5613037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATTAGAATGTGAATATAGACATTAATAGTCTACAACCTCCCCCTTTCATTCCTCATTCGCAGTCTAACAGTAGGCTCTCTGTTTCTAATGTAGAAATGTAAACTAAGGTCCTCATTCGCAGTCTAACAGTAGGCTCTCTGTTTCTAATGTAGAAATGTAAACTAAGGTCCTCATTCACAGTCTAACAGTAGGCTCTCTGTTTCTAATGTAGAAATGTAAACTAAGGTCCTCATTCACAGTCTAACAGTAGGCTCTCTGTTTCTAATGTAGAAATGTAAACTAAGGTCCTCATTCACAGTCTAACAGTAGGCTCTCTGTTTCTAATGTAGAAATGTAAACCAAGGTCCTCATTCACAGTCTAACAGTAGGCTCTCTGTTTCTAATTTAGAAATGTAAACTACGGTCCTCATTTAGACAGGCTTTGAGGACCTGCCAAACGTTCTTTAGCATTGTCCTCATTAATTTCTAATGATCAGCTAATGATCAGGTAGTAttcctctggtcatgttatactgCCCTTCCTTACTTTAACAAGAATGAATGACTGAGTGAGTGATTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123446 lncRNA upstream 6100 5604983 ~ 5606316 (+) True G108584
TU123450 lncRNA upstream 9505 5600663 ~ 5602911 (+) True G108588
TU123445 lncRNA upstream 37407 5573451 ~ 5575009 (+) True G108583
TU123483 lncRNA upstream 78297 5532987 ~ 5534119 (+) True G108616
TU123482 lncRNA upstream 79958 5529962 ~ 5532458 (+) True G108615
TU123489 lncRNA downstream 548 5613585 ~ 5614123 (+) True G108622
TU123490 lncRNA downstream 1184 5614221 ~ 5614705 (+) True G108623
TU123533 lncRNA downstream 26634 5639671 ~ 5641680 (+) False G108652
TU123531 lncRNA downstream 27565 5640602 ~ 5642231 (+) True G108652
TU123534 lncRNA downstream 31591 5644628 ~ 5646025 (+) True G108653
XM_036935845.1 mRNA upstream 20163 5575379 ~ 5592253 (+) False LOC110506279
XM_036935846.1 mRNA upstream 20163 5575381 ~ 5592253 (+) False LOC110506279
XR_005034680.1 mRNA upstream 21664 5575366 ~ 5590752 (+) False LOC110506279
XR_005034681.1 mRNA upstream 21664 5575367 ~ 5590752 (+) False LOC110506279
XM_036935852.1 mRNA upstream 21765 5575366 ~ 5590651 (+) False LOC110506279
XR_005034689.1 mRNA downstream 2959 5615996 ~ 5748096 (+) False jarid2a
XM_036935962.1 mRNA downstream 2967 5616004 ~ 5753847 (+) False jarid2a
XM_036935963.1 mRNA downstream 2967 5616004 ~ 5753847 (+) True jarid2a
XM_036935966.1 mRNA downstream 199210 5812247 ~ 5839646 (+) True mylipb
XM_036936009.1 mRNA downstream 228480 5841517 ~ 5854174 (+) False LOC110505528
TU123443 other upstream 29966 5581293 ~ 5582450 (+) True LOC110506279
TU123438 other upstream 69551 5506546 ~ 5542865 (+) True ptp4a3b
TU123151 other upstream 312483 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 475424 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 754142 4857911 ~ 4858274 (+) True G108048
TU123575 other downstream 106928 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 106928 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 167177 5780214 ~ 5782644 (+) True G108702
TU123653 other downstream 287474 5900511 ~ 5900950 (+) True G108733
TU123496 other downstream 340849 5953886 ~ 5958769 (+) False LOC110505637

Expression Profile