RNA id: TU123490


Basic Information

Item Value
RNA id TU123490
length 485
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G108623
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5614221 ~ 5614705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAATAACACAGCTTTACAACACTAAAAGTTGATCTCTACAAATGGAAAACAACATGCTGTAAATCAGCGTTGAAGGACAACAGTCCCTCTAATGATGCTGCTGAAACCAGTCTATGAATCACAAGAGGGGTTTGTGTTGTATAAAAAGGCTAAGCTCAACATCAAACTAAATCAATGATGACTGTAACATATTAGTAATGTGTGTATGGCCTTGGGCCACGGCTAGATTCTTGTCTCAAAAGCCCCTGAGAAAACATACAGGAATGTATTGGGGTTCTGAAATATAATACAAAAAAACTGGATGGACTCCTGCAGGCAGTGATCAGTCTAGATGCTTGTAAATCAAAGTGCTTCTTTGggcccgtcccaaatggcactgcatttcatttatagtgcactacttttgaccagggctcataggactctggtcgaatgtagtgcactattttgggaatagggtgtcatgtgGAACACAGTTTATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123489 lncRNA upstream 98 5613585 ~ 5614123 (+) True G108622
TU123488 lncRNA upstream 1184 5612416 ~ 5613037 (+) True G108621
TU123446 lncRNA upstream 7905 5604983 ~ 5606316 (+) True G108584
TU123450 lncRNA upstream 11310 5600663 ~ 5602911 (+) True G108588
TU123445 lncRNA upstream 39212 5573451 ~ 5575009 (+) True G108583
TU123533 lncRNA downstream 24966 5639671 ~ 5641680 (+) False G108652
TU123531 lncRNA downstream 25897 5640602 ~ 5642231 (+) True G108652
TU123534 lncRNA downstream 29923 5644628 ~ 5646025 (+) True G108653
TU123546 lncRNA downstream 46337 5661042 ~ 5663859 (+) True G108663
TU123566 lncRNA downstream 93012 5707717 ~ 5709050 (+) True G108675
XM_036935845.1 mRNA upstream 21968 5575379 ~ 5592253 (+) False LOC110506279
XM_036935846.1 mRNA upstream 21968 5575381 ~ 5592253 (+) False LOC110506279
XR_005034680.1 mRNA upstream 23469 5575366 ~ 5590752 (+) False LOC110506279
XR_005034681.1 mRNA upstream 23469 5575367 ~ 5590752 (+) False LOC110506279
XM_036935852.1 mRNA upstream 23570 5575366 ~ 5590651 (+) False LOC110506279
XR_005034689.1 mRNA downstream 1291 5615996 ~ 5748096 (+) False jarid2a
XM_036935962.1 mRNA downstream 1299 5616004 ~ 5753847 (+) False jarid2a
XM_036935963.1 mRNA downstream 1299 5616004 ~ 5753847 (+) True jarid2a
XM_036935966.1 mRNA downstream 197542 5812247 ~ 5839646 (+) True mylipb
XM_036936009.1 mRNA downstream 226812 5841517 ~ 5854174 (+) False LOC110505528
TU123443 other upstream 31771 5581293 ~ 5582450 (+) True LOC110506279
TU123438 other upstream 71356 5506546 ~ 5542865 (+) True ptp4a3b
TU123151 other upstream 314288 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 477229 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 755947 4857911 ~ 4858274 (+) True G108048
TU123575 other downstream 105260 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 105260 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 165509 5780214 ~ 5782644 (+) True G108702
TU123653 other downstream 285806 5900511 ~ 5900950 (+) True G108733
TU123496 other downstream 339181 5953886 ~ 5958769 (+) False LOC110505637

Expression Profile