RNA id: TU123533


Basic Information

Item Value
RNA id TU123533
length 577
lncRNA type intronic
GC content 0.34
exon number 2
gene id G108652
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5639671 ~ 5642231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agataggatggacaacatgttgtatggaggagagataggatggacaacatgttgtatggaggagagataggatggacaacatgttgtatggaggagagataggatggacaacatgttgtatggaggagagataggatggacaacatgttgtatagagagataggatggacaacatgttgtatggaggagagataggatggacaacatgttgtatagaggagagatagtatggacaacatgttgtatggaggagagataggatggacaacatgttgtatggaggagagataggatggacaacatgttgtatggagagataggatggacaacatgttgtatagaggagagataggatggacaacatgctgtatggaggagagataggatggacaacatgttgtatagagagataggatggacaacatgttgtaaagagagataggatggacaacatgttgtatagagagataggatggacatcatgttgtatagagagataggatggacaacatgttgtatagagagataggatggacaacatgttgtatggaggagagatagggtggacaacatgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123490 lncRNA upstream 24966 5614221 ~ 5614705 (+) True G108623
TU123489 lncRNA upstream 25548 5613585 ~ 5614123 (+) True G108622
TU123488 lncRNA upstream 26634 5612416 ~ 5613037 (+) True G108621
TU123446 lncRNA upstream 33355 5604983 ~ 5606316 (+) True G108584
TU123450 lncRNA upstream 36760 5600663 ~ 5602911 (+) True G108588
TU123534 lncRNA downstream 2948 5644628 ~ 5646025 (+) True G108653
TU123546 lncRNA downstream 19362 5661042 ~ 5663859 (+) True G108663
TU123566 lncRNA downstream 66037 5707717 ~ 5709050 (+) True G108675
TU123567 lncRNA downstream 67677 5709357 ~ 5710446 (+) True G108676
TU123568 lncRNA downstream 69469 5711149 ~ 5711910 (+) True G108677
XM_036935845.1 mRNA upstream 47418 5575379 ~ 5592253 (+) False LOC110506279
XM_036935846.1 mRNA upstream 47418 5575381 ~ 5592253 (+) False LOC110506279
XR_005034680.1 mRNA upstream 48919 5575366 ~ 5590752 (+) False LOC110506279
XR_005034681.1 mRNA upstream 48919 5575367 ~ 5590752 (+) False LOC110506279
XM_036935852.1 mRNA upstream 49020 5575366 ~ 5590651 (+) False LOC110506279
XM_036935966.1 mRNA downstream 170567 5812247 ~ 5839646 (+) True mylipb
XM_036936009.1 mRNA downstream 199837 5841517 ~ 5854174 (+) False LOC110505528
XM_036936052.1 mRNA downstream 312301 5953981 ~ 5955445 (+) False LOC110505637
XR_005034712.1 mRNA downstream 334520 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 336586 5978266 ~ 5979890 (+) True LOC118937375
TU123443 other upstream 57221 5581293 ~ 5582450 (+) True LOC110506279
TU123438 other upstream 96806 5506546 ~ 5542865 (+) True ptp4a3b
TU123151 other upstream 339738 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 502679 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 781397 4857911 ~ 4858274 (+) True G108048
TU123575 other downstream 78285 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 78285 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 138534 5780214 ~ 5782644 (+) True G108702
TU123653 other downstream 258831 5900511 ~ 5900950 (+) True G108733
TU123496 other downstream 312206 5953886 ~ 5958769 (+) False LOC110505637

Expression Profile