RNA id: TU123531


Basic Information

Item Value
RNA id TU123531
length 709
lncRNA type intronic
GC content 0.41
exon number 2
gene id G108652
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5639671 ~ 5642231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatggaggagagataggatggacaacatgttgtatagaggagagataggatggacaacatgttgtatggaggagagataggatggacaacatgttttatggaggagagataggatggacatCATGTTGTAtggagagataggatggacaacatgttgtatagaggagagataggatggacaacatgttgtatagaggagagataggatggacaacatgttgtatggaggggagataggatggacaacatgttgtatggaggagagataggatggacaacatgttgtatagaggagagataggatggacaacatgttgtatggaggagagataggatggacaacatgttgtatggaggagagataggatggacaacatgttgtatagaggagagataggatggacaacatgttgtatggaggagagataggatggacaacatgttgtatagagagataggatggacaacatgttgtatagagagataggatggacaacatgttgtatggaggagagataggatggacatGCAAGTAGTCTTTAGCCTATATTTTTTGAATTCAATAAATGGCTGCTGAATTTTTCAAGGGATGCTgggagaaaaacaacaacatatccctgctctttcccctcctcccgtTTCTCAACCAAAAAAGGTTGATGGAAAAGGTTATTCTCAAATCCTTCTCTTCACTCACTCTGTTTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123490 lncRNA upstream 25897 5614221 ~ 5614705 (+) True G108623
TU123489 lncRNA upstream 26479 5613585 ~ 5614123 (+) True G108622
TU123488 lncRNA upstream 27565 5612416 ~ 5613037 (+) True G108621
TU123446 lncRNA upstream 34286 5604983 ~ 5606316 (+) True G108584
TU123450 lncRNA upstream 37691 5600663 ~ 5602911 (+) True G108588
TU123534 lncRNA downstream 2397 5644628 ~ 5646025 (+) True G108653
TU123546 lncRNA downstream 18811 5661042 ~ 5663859 (+) True G108663
TU123566 lncRNA downstream 65486 5707717 ~ 5709050 (+) True G108675
TU123567 lncRNA downstream 67126 5709357 ~ 5710446 (+) True G108676
TU123568 lncRNA downstream 68918 5711149 ~ 5711910 (+) True G108677
XM_036935845.1 mRNA upstream 48349 5575379 ~ 5592253 (+) False LOC110506279
XM_036935846.1 mRNA upstream 48349 5575381 ~ 5592253 (+) False LOC110506279
XR_005034680.1 mRNA upstream 49850 5575366 ~ 5590752 (+) False LOC110506279
XR_005034681.1 mRNA upstream 49850 5575367 ~ 5590752 (+) False LOC110506279
XM_036935852.1 mRNA upstream 49951 5575366 ~ 5590651 (+) False LOC110506279
XM_036935966.1 mRNA downstream 170016 5812247 ~ 5839646 (+) True mylipb
XM_036936009.1 mRNA downstream 199286 5841517 ~ 5854174 (+) False LOC110505528
XM_036936052.1 mRNA downstream 311750 5953981 ~ 5955445 (+) False LOC110505637
XR_005034712.1 mRNA downstream 333969 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 336035 5978266 ~ 5979890 (+) True LOC118937375
TU123443 other upstream 58152 5581293 ~ 5582450 (+) True LOC110506279
TU123438 other upstream 97737 5506546 ~ 5542865 (+) True ptp4a3b
TU123151 other upstream 340669 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 503610 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 782328 4857911 ~ 4858274 (+) True G108048
TU123575 other downstream 77734 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 77734 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 137983 5780214 ~ 5782644 (+) True G108702
TU123653 other downstream 258280 5900511 ~ 5900950 (+) True G108733
TU123496 other downstream 311655 5953886 ~ 5958769 (+) False LOC110505637

Expression Profile