RNA id: TU123534


Basic Information

Item Value
RNA id TU123534
length 1115
lncRNA type intronic
GC content 0.42
exon number 3
gene id G108653
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5644628 ~ 5646025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGACCAAGAAGTGTGAGGAGGACAGGACCAGGAAGTGTGAGGAGGACAGGACCAGGAAGTGCAGTGTGAGGAGGATGTTCAAAGAGGTGTAGAATGAACTTAATAAAAAGGTTGTCTTGGTTTATTCATCACCGTCGTTGTAGCTGCACTTAGATGACGAACAgattgacacgcacacacacgcacgcacacacgcagagagagagaacagcacaAGACAGACGTCTTTAAAACAGCTATTCTTTGTGGTCAGGCGCCATGCTCATTACCGGCTGACTAAATTGCTGACAGGAAGTCAGAGGTCAACAGTCCCCTTTGACCCCAGGGCTGGCAGGGGTGAGGGGGATTGAGTCCAgcagaccagacaagaccagCCTGAAGGAAGCAGAAGGGAGAGAAGCGTGACAGGACCAGGAAGTGTAGTGTGAGTAGGACAggacaaaatggcaccctTTTATAAGGACTAGTGTTCTATCTGGGAGGCAGACGGAGACTCtcatggttgtgttgtattgtatagtcaaatcaaatttaaacacatgttatttgtcacgtgcaccgaatacaacaggtgtagactttacagtgaaatgcttacgtacaagccattaaccaacaatgcagctttaagaaaaataagtgttaagatattatttaataaaataaactgaagtaaaaaaaatacataaatgaaacatttaaatttaaaagaagaaaatagaaaaataacaaataattaaagtgcgacaataaaataacagtagcgaggcgatATACAGGCCCAGATTATATACAGGCCCAGATTATATACAGGCCCAGATTATATACAGGCCCAGATTATATACAGGCCCAGATTATATACAGGCCCTGATTATATACAGGCCCAGATTATATACAGGCCTAGATTATATACAGGCCCAGATTATATACAGGCCCAAGCCCAGATTATATACAGGCCCAGATTATATACAGGCCCAGATTATATACAGGCCTAGATTATATACAGGCCCAAATTATATACAGGCCCAGATTATATACAGGCCCAGATTATATCGAAGCCCAGATTATATCGGGGCCCATATATTATCGAGGCCCAGATTAAATCAAACCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123531 lncRNA upstream 2397 5640602 ~ 5642231 (+) True G108652
TU123533 lncRNA upstream 2948 5639671 ~ 5641680 (+) False G108652
TU123490 lncRNA upstream 29923 5614221 ~ 5614705 (+) True G108623
TU123489 lncRNA upstream 30505 5613585 ~ 5614123 (+) True G108622
TU123488 lncRNA upstream 31591 5612416 ~ 5613037 (+) True G108621
TU123546 lncRNA downstream 15017 5661042 ~ 5663859 (+) True G108663
TU123566 lncRNA downstream 61692 5707717 ~ 5709050 (+) True G108675
TU123567 lncRNA downstream 63332 5709357 ~ 5710446 (+) True G108676
TU123568 lncRNA downstream 65124 5711149 ~ 5711910 (+) True G108677
TU123582 lncRNA downstream 87590 5733615 ~ 5775376 (+) True G108685
XM_036935845.1 mRNA upstream 52375 5575379 ~ 5592253 (+) False LOC110506279
XM_036935846.1 mRNA upstream 52375 5575381 ~ 5592253 (+) False LOC110506279
XR_005034680.1 mRNA upstream 53876 5575366 ~ 5590752 (+) False LOC110506279
XR_005034681.1 mRNA upstream 53876 5575367 ~ 5590752 (+) False LOC110506279
XM_036935852.1 mRNA upstream 53977 5575366 ~ 5590651 (+) False LOC110506279
XM_036935966.1 mRNA downstream 166222 5812247 ~ 5839646 (+) True mylipb
XM_036936009.1 mRNA downstream 195492 5841517 ~ 5854174 (+) False LOC110505528
XM_036936052.1 mRNA downstream 307956 5953981 ~ 5955445 (+) False LOC110505637
XR_005034712.1 mRNA downstream 330175 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 332241 5978266 ~ 5979890 (+) True LOC118937375
TU123443 other upstream 62178 5581293 ~ 5582450 (+) True LOC110506279
TU123438 other upstream 101763 5506546 ~ 5542865 (+) True ptp4a3b
TU123151 other upstream 344695 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 507636 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 786354 4857911 ~ 4858274 (+) True G108048
TU123575 other downstream 73940 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 73940 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 134189 5780214 ~ 5782644 (+) True G108702
TU123653 other downstream 254486 5900511 ~ 5900950 (+) True G108733
TU123496 other downstream 307861 5953886 ~ 5958769 (+) False LOC110505637

Expression Profile