RNA id: TU123568


Basic Information

Item Value
RNA id TU123568
length 543
lncRNA type intronic
GC content 0.37
exon number 2
gene id G108677
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5711149 ~ 5711910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacactacaataccaaccagctcacactcacagtacactacattaccaaccagcttacagtacactacaataccaaccagctcacagtacactacattaccaaccagcttacagtacactacaataccaaccagctcacagtacactacaataccaaccagctcacagtacactacaataccaaccagctcacagtacactacaataccaaccagctcacagtacactacaataccaaccagctcacagtacactacaataccaacCAGCTCACACTCACAGTACACTATAATACCAACCAgctcacagtacactacaataccaaccagctcacagtacactacattaccaaccAGCTCACACTCACAGTACACCACATTACCAACCAGCTCACATACCACCAGGAACAGCAAAGACCTGCCCACCTGCTGCTCAGACTAGTCTTATGTCAAGTGTCATACTTCAACATGTAGCATTATGGAAAGCAGTACAAATGCACACTGGCATTAAAGCTCAGCGTTTTTCTCTCCCATGCAACTATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123567 lncRNA upstream 703 5709357 ~ 5710446 (+) True G108676
TU123566 lncRNA upstream 2099 5707717 ~ 5709050 (+) True G108675
TU123546 lncRNA upstream 47290 5661042 ~ 5663859 (+) True G108663
TU123534 lncRNA upstream 65124 5644628 ~ 5646025 (+) True G108653
TU123531 lncRNA upstream 68918 5640602 ~ 5642231 (+) True G108652
TU123582 lncRNA downstream 21705 5733615 ~ 5775376 (+) True G108685
TU123519 lncRNA downstream 45094 5757004 ~ 5757953 (+) True G108643
TU123520 lncRNA downstream 46692 5758602 ~ 5760920 (+) True G108644
TU123593 lncRNA downstream 56036 5767946 ~ 5769067 (+) True G108694
TU123605 lncRNA downstream 62470 5774380 ~ 5774708 (+) True G108697
XM_036935845.1 mRNA upstream 118896 5575379 ~ 5592253 (+) False LOC110506279
XM_036935846.1 mRNA upstream 118896 5575381 ~ 5592253 (+) False LOC110506279
XR_005034680.1 mRNA upstream 120397 5575366 ~ 5590752 (+) False LOC110506279
XR_005034681.1 mRNA upstream 120397 5575367 ~ 5590752 (+) False LOC110506279
XM_036935852.1 mRNA upstream 120498 5575366 ~ 5590651 (+) False LOC110506279
XM_036935966.1 mRNA downstream 100337 5812247 ~ 5839646 (+) True mylipb
XM_036936009.1 mRNA downstream 129607 5841517 ~ 5854174 (+) False LOC110505528
XM_036936052.1 mRNA downstream 242071 5953981 ~ 5955445 (+) False LOC110505637
XR_005034712.1 mRNA downstream 264290 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 266356 5978266 ~ 5979890 (+) True LOC118937375
TU123443 other upstream 128699 5581293 ~ 5582450 (+) True LOC110506279
TU123438 other upstream 168284 5506546 ~ 5542865 (+) True ptp4a3b
TU123151 other upstream 411216 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 574157 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 852875 4857911 ~ 4858274 (+) True G108048
TU123575 other downstream 8055 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 8055 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 68304 5780214 ~ 5782644 (+) True G108702
TU123653 other downstream 188601 5900511 ~ 5900950 (+) True G108733
TU123496 other downstream 241976 5953886 ~ 5958769 (+) False LOC110505637

Expression Profile