RNA id: TU123579


Basic Information

Item Value
RNA id TU123579
length 1496
RNA type TUCP
GC content 0.25
exon number 5
gene id G108682
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5719965 ~ 5725579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttcaacgtacagtctcttcaacgtacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaatatacagtctcttcaatatacagtctcttcaacgtacagtcttcaatgtacagtctcttcaatatacagtctcttcaacgtacagtctcttcaatgtacagtctcttcaacgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaacgtacagtcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaacgtacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatttacagtctcttcaatatacagtctcttcaatgtacagtcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaatgtacagtcttttaaatgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaacgtacagtcttcaacgtacagtctcttcaatgtacagtctcttcaacgtacagtcttcaacgtacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcgatgtacagtctcttcaacgtacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtcttcaatgtacagtcttcaatgtacagtcttcaatgtacagtctcttcaacgtacagtctcttcaacgtacagtctcttcaacgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatgtacagtcttcaatgtacagtcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaacgtacagtctcttcaatgtacagtcttcaatgtacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaacgtacagtctcttcaatatacagtctcttcaacgtacagtctcttcaacgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaacgTACAGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123568 lncRNA upstream 8055 5711149 ~ 5711910 (+) True G108677
TU123567 lncRNA upstream 9519 5709357 ~ 5710446 (+) True G108676
TU123566 lncRNA upstream 10915 5707717 ~ 5709050 (+) True G108675
TU123546 lncRNA upstream 56106 5661042 ~ 5663859 (+) True G108663
TU123534 lncRNA upstream 73940 5644628 ~ 5646025 (+) True G108653
TU123582 lncRNA downstream 8233 5733615 ~ 5775376 (+) True G108685
TU123519 lncRNA downstream 31622 5757004 ~ 5757953 (+) True G108643
TU123520 lncRNA downstream 33220 5758602 ~ 5760920 (+) True G108644
TU123593 lncRNA downstream 42564 5767946 ~ 5769067 (+) True G108694
TU123605 lncRNA downstream 48998 5774380 ~ 5774708 (+) True G108697
XM_036935845.1 mRNA upstream 127712 5575379 ~ 5592253 (+) False LOC110506279
XM_036935846.1 mRNA upstream 127712 5575381 ~ 5592253 (+) False LOC110506279
XR_005034680.1 mRNA upstream 129213 5575366 ~ 5590752 (+) False LOC110506279
XR_005034681.1 mRNA upstream 129213 5575367 ~ 5590752 (+) False LOC110506279
XM_036935852.1 mRNA upstream 129314 5575366 ~ 5590651 (+) False LOC110506279
XM_036935966.1 mRNA downstream 86865 5812247 ~ 5839646 (+) True mylipb
XM_036936009.1 mRNA downstream 116135 5841517 ~ 5854174 (+) False LOC110505528
XM_036936052.1 mRNA downstream 228599 5953981 ~ 5955445 (+) False LOC110505637
XR_005034712.1 mRNA downstream 250818 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 252884 5978266 ~ 5979890 (+) True LOC118937375
TU123443 other upstream 137515 5581293 ~ 5582450 (+) True LOC110506279
TU123438 other upstream 177100 5506546 ~ 5542865 (+) True ptp4a3b
TU123151 other upstream 420032 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 582973 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 861691 4857911 ~ 4858274 (+) True G108048
TU123616 other downstream 54832 5780214 ~ 5782644 (+) True G108702
TU123653 other downstream 175129 5900511 ~ 5900950 (+) True G108733
TU123496 other downstream 228504 5953886 ~ 5958769 (+) False LOC110505637
TU123500 other downstream 228504 5953886 ~ 5958813 (+) False LOC110505637
TU123491 other downstream 228563 5953945 ~ 5958769 (+) False LOC110505637

Expression Profile