RNA id: TU123520


Basic Information

Item Value
RNA id TU123520
length 2205
lncRNA type intronic
GC content 0.43
exon number 2
gene id G108644
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5758602 ~ 5760920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACAGAGCCCCGAGTCTGGCCAGAGACACCTCTGTGTGGAGCGTGCAGAGACTAGCACCCTGAGTCTGGCCAGAGAGACTATTCTGTGACCTCTTTATCTCAGCTAACAACCCTTTCTTGTGATACTACAGTATCAGGATACTAACAAGataccactacagtactacaggatACTAACAAGATACCACTACAATACTACAGGATACCACTACAATACTACAGGataccactacagtactacaggataccactacagtactacaggaaACCCCTACAATACTACAGGATACTAACAAGATACCACTACAGAACTACAGGATACCCCTACAGTACTACAGGATACCACTACAATACTACAGGATACCCCTACAGTACTACAGGATACCCCTACAGTACTACAGGATACCACTACAATACTACAGGATACTAACAAGATaccactacagcactacaggaTACTAACACGATACCACTACAATACTACAGGATACTAACAAGATACCACTACAATACTACAGGATACCATTACAATACTACAGGATACTAACAAGataccactacagtactacaggatAGTAACACCAGCAGAGGAACCCTTGACTTTGTCGTCACACTTGTATTTTCTTATAAGCACTAACTTTGCTGACAGCTGCTTTATTGAGGAAtggttttaaatcaaatcaaactttatttgtcatgtgcgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgcttatttacaggctctaaccgacagtgcaaaaaaggtattaggtgaacaaagaaataagtaaagaaataaaacaacagtaaaaagacaggctatatacagtagagaggctatatacagtagcgaggctatatacagtagcgaggctataaaagtagggaggctacatacagacttACTGTGACTGAGATACATGGCTGTTTCACCTAGTTACCTTAAGATgaaaatcactctggataagagcacctgctaaatgactaacatgtaaattTATATCACCCACATTGTAGGCTAATTATTTACCTGCCTGCCCAAGTGTGTCTCCTCCGGATCAGAAAACAACCGGACGGTTCTGTTATGTGAAGCCAGACATGTATCGTGACTTTAGTCCCAGTAAGCTCTAGTCCCCACTGTGAGCCATGCCTCTCTCGGTCTTAAAGACAGGAAGCACCTACCCACTTCTCAGAACAGCAGGAAGTGGTTATGTTACTTTTATGGAACCATAGGTGTGTCTGTGTTACGGCTAGAGGTGCTACATCCTTTTAAAAAGACGCATATTGTTGCAGTGAATCTTTTGTCCTAGATCAAGCTCTACTCATCATCAGCTGCCTTTACAAGAACTGACATCCGTGTGGAGTCAAGTAACAGCAGATTGAGGAACTAAGTATCTTCTTTGTTTTCTGACAAAAGTTCATCCCAGAAATGCtgcctcattgaaaataagaatttcaaCCCTGAATCATTGGATTCTCACAAATCCTTGAAATGCCCGCCAAGGTGCCAATACAGGCTCAGGAATTCCAGGTAGGTCATTTCTCCTTGTCAGAATCTACCAAAGCATTtgaacacagtcagtcagtgtcaCCCCTGTTGTAAAGGGGTGTTGTTGTCagtgggctggatgtgtcaactCGACTAGTCCCAGGTGGGCAGGAAGTCAAGCCAGCTGTCACCAGGCAGGGCCCCAGAATAACTGTCTGTCCCCCaaacggctccctattccctttatagtgcactacttttggaccagggcccataggaaataCACAGGCTAGGGTGCCATTTCTAGGGAACACTAGGCTTCCATCTGGGAAGCTACCTGTGATCAGAGACATGCATTCTATCTTCCACATGGTGAACAGCAGCTCAACAGAACCAGCCTCTGATTCACTAGAAATACCACTCTCCTTTTATCACATATTGCAACACCACAACTCTTCATCCACAATACATCTACATGACGGCCTCCCACAGGTAACGTGGTGTCCTCCCATAGGTAACATTATGTCCTCCCATAGGTAACATCCCATAGGTAACATTATGGCCTTCCATAGGTAACATCCCATAGGTAACATTATGGCCTTCCATAGGGAACATCCCATAGGTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123519 lncRNA upstream 649 5757004 ~ 5757953 (+) True G108643
TU123568 lncRNA upstream 46692 5711149 ~ 5711910 (+) True G108677
TU123567 lncRNA upstream 48156 5709357 ~ 5710446 (+) True G108676
TU123566 lncRNA upstream 49552 5707717 ~ 5709050 (+) True G108675
TU123546 lncRNA upstream 94743 5661042 ~ 5663859 (+) True G108663
TU123593 lncRNA downstream 7026 5767946 ~ 5769067 (+) True G108694
TU123605 lncRNA downstream 13460 5774380 ~ 5774708 (+) True G108697
TU123607 lncRNA downstream 14987 5775907 ~ 5779231 (+) True G108698
TU123610 lncRNA downstream 15950 5776870 ~ 5778747 (+) True G108699
TU123615 lncRNA downstream 19294 5780214 ~ 5782921 (+) False G108702
XM_036935962.1 mRNA upstream 4755 5616004 ~ 5753847 (+) False jarid2a
XM_036935963.1 mRNA upstream 4755 5616004 ~ 5753847 (+) True jarid2a
XR_005034689.1 mRNA upstream 10506 5615996 ~ 5748096 (+) False jarid2a
XM_036935845.1 mRNA upstream 166349 5575379 ~ 5592253 (+) False LOC110506279
XM_036935966.1 mRNA downstream 51327 5812247 ~ 5839646 (+) True mylipb
XM_036936009.1 mRNA downstream 80597 5841517 ~ 5854174 (+) False LOC110505528
XM_036936052.1 mRNA downstream 193061 5953981 ~ 5955445 (+) False LOC110505637
XR_005034712.1 mRNA downstream 215280 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 217346 5978266 ~ 5979890 (+) True LOC118937375
TU123575 other upstream 33023 5719965 ~ 5725579 (+) False G108682
TU123579 other upstream 33220 5719965 ~ 5725382 (+) True G108682
TU123443 other upstream 176152 5581293 ~ 5582450 (+) True LOC110506279
TU123438 other upstream 215737 5506546 ~ 5542865 (+) True ptp4a3b
TU123151 other upstream 458669 5296179 ~ 5299933 (+) True G108354
TU123616 other downstream 19294 5780214 ~ 5782644 (+) True G108702
TU123653 other downstream 139591 5900511 ~ 5900950 (+) True G108733
TU123496 other downstream 192966 5953886 ~ 5958769 (+) False LOC110505637
TU123500 other downstream 192966 5953886 ~ 5958813 (+) False LOC110505637
TU123491 other downstream 193025 5953945 ~ 5958769 (+) False LOC110505637

Expression Profile