RNA id: TU123621


Basic Information

Item Value
RNA id TU123621
length 452
lncRNA type intronic
GC content 0.49
exon number 3
gene id G108707
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5804086 ~ 5805042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctggtggcgcagctgGCGCTGTAGCGCCCTTAACCACCCGGGAGCCCAAGGTggttttattgatctcagattcttAGTGTCATAGTAGCCTGCTGTCTCCATCAGGTGTGGTATTAAAACAAGATTCTGTCAGTCTCCATCAGGTGTGTGATATTAAAACAAGATTCTGTCAGTCTCCATCAGGTGTGTGGTATTAAAACAAGATTCTGTCAGTCTCCATCAGGTGTGTGGTATTAAAACAACATTATGtcaaagtctccagtcatgtaaaaagACAACTTCATGTAATGTGTTTATAAAAGGCCAACATTTTCCCAGGACCCCGGGCTACTAATAATGTCCCCATGTGTGGAATGTCAGTAAGTGTCTCTACTCCATTGCTCTATGCCAATACGAtgatatgcatgcaatgctttattagAAAGGTGAATTATTTTCTCTCTCATACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123615 lncRNA upstream 21165 5780214 ~ 5782921 (+) False G108702
TU123607 lncRNA upstream 24855 5775907 ~ 5779231 (+) True G108698
TU123610 lncRNA upstream 25339 5776870 ~ 5778747 (+) True G108699
TU123605 lncRNA upstream 29378 5774380 ~ 5774708 (+) True G108697
TU123593 lncRNA upstream 35019 5767946 ~ 5769067 (+) True G108694
TU123624 lncRNA downstream 1379 5806421 ~ 5806940 (+) True G108709
TU123629 lncRNA downstream 28614 5833656 ~ 5834519 (+) True G108712
TU123515 lncRNA downstream 48968 5854010 ~ 5854355 (+) True LOC110505528
TU123522 lncRNA downstream 50213 5855255 ~ 5855783 (+) True G108646
TU123642 lncRNA downstream 74895 5879937 ~ 5880466 (+) True G108722
XM_036935962.1 mRNA upstream 50239 5616004 ~ 5753847 (+) False jarid2a
XM_036935963.1 mRNA upstream 50239 5616004 ~ 5753847 (+) True jarid2a
XR_005034689.1 mRNA upstream 55990 5615996 ~ 5748096 (+) False jarid2a
XM_036935845.1 mRNA upstream 211833 5575379 ~ 5592253 (+) False LOC110506279
XM_036935966.1 mRNA downstream 7205 5812247 ~ 5839646 (+) True mylipb
XM_036936009.1 mRNA downstream 36475 5841517 ~ 5854174 (+) False LOC110505528
XM_036936052.1 mRNA downstream 148939 5953981 ~ 5955445 (+) False LOC110505637
XR_005034712.1 mRNA downstream 171158 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 173224 5978266 ~ 5979890 (+) True LOC118937375
TU123616 other upstream 21442 5780214 ~ 5782644 (+) True G108702
TU123575 other upstream 78507 5719965 ~ 5725579 (+) False G108682
TU123579 other upstream 78704 5719965 ~ 5725382 (+) True G108682
TU123443 other upstream 221636 5581293 ~ 5582450 (+) True LOC110506279
TU123438 other upstream 261221 5506546 ~ 5542865 (+) True ptp4a3b
TU123653 other downstream 95469 5900511 ~ 5900950 (+) True G108733
TU123496 other downstream 148844 5953886 ~ 5958769 (+) False LOC110505637
TU123500 other downstream 148844 5953886 ~ 5958813 (+) False LOC110505637
TU123491 other downstream 148903 5953945 ~ 5958769 (+) False LOC110505637
TU123495 other downstream 148903 5953945 ~ 5958813 (+) False LOC110505637

Expression Profile