RNA id: TCONS_00028069


Basic Information

Item Value
RNA id TCONS_00028069
length 1010
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_014084
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 25526354 ~ 25548630 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCCAGCAGAGGGCAGCAGCAGCTCCAATAACACACAGCGCTGCGGAGAAGAAACCAGCATGTACACAAGGGCATGCACTTGGTaataaattttatgtaattacTGTATTTGTATTAAGTAATCTGTCCGTCTCTCTTATAAGCTATGATTTAAGTAGCTCGTGTTCTGGGCTGCTGCAGTGCGTTATTGTGAATCATATCAGTTTCATACAAAGTTCACTGGCAGAAAAGTAGCCTAATGGCAAATCCAGCACATATATCAGCGGTTCGGACTTTGTATAAGAAAATCCTGGTGCTTCACCGATTTCTGCCCATTGACCTGCGGGCTCTGGGCGACCAGTATGTGAAGGATGAGTTCAGGAGACACAAGACTTCTTCAGATGAAGAGGCCAAACACTTCATGGTGGAATGGCAGAACTACAAAGACACCTTACAGACGCAGGTGCTGGAAGCAATGGGAAACAAGAAGCTGGTGTTTGGAGCTGATTTATCGCAAGACAAACTCAAACACTTTCAAGATGAGCAGATTGGGCAGCTTTATGAGCTTATGCTCGAGTCTacaaaacccaaccgacagtttgaTATTCAAGAGGAGGGAACGCCAAAGTAAGGGAAAAGAAAGGTGCTTTATCTCCTCTTCAAGGGGAATGGGGAGTCATCCCATTGGgacatattttgatttatttaagtaCTTTCGATCATAGCTAAGACTGAAGGTTACAataaagtccatgtgaaatcaaaatgtactgtgTTTACTTTGATAGACTTTAGGTGAAGAATTGGTCTGTGACCATTAATTAACCAAACAAagttaattcacacacacacataaaaagtttgttttggtaattttcaaTCAAAGATGAACCCTTTGCTTCTACATTGGGAGTTGTGGTCCTTCTCTGGTGATGTCAGATTGATGACTTCAGCCACAATTTTCCTAAAAACTCCCATCTTAATGTTAATTTGCTACAAGAGTGTAATGTGCAAAGAGAAAGCCCTGCCCC

Function

GO:

id name namespace
GO:0006105 succinate metabolic process biological_process
GO:0034553 mitochondrial respiratory chain complex II assembly biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0005759 mitochondrial matrix cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-94 Predicted to be involved in mitochondrial respiratory chain complex II assembly and succinate metabolic process. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrial intermembrane space. Orthologous to human SDHAF3 (succinate dehydrogenase complex assembly factor 3).

Ensembl:

ensembl_id ENSDART00000052396

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028060 lncRNA upstream 373777 25151416 ~ 25152577 (+) True XLOC_014079
TCONS_00029915 lncRNA upstream 465387 25003517 ~ 25060967 (+) True XLOC_014078
TCONS_00029914 lncRNA upstream 542846 24959229 ~ 24983508 (+) True XLOC_014077
TCONS_00028059 lncRNA upstream 591059 24922531 ~ 24935295 (+) True XLOC_014076
TCONS_00028055 lncRNA upstream 640409 24885116 ~ 24885945 (+) True XLOC_014074
TCONS_00029916 lncRNA downstream 1485243 27033873 ~ 27041528 (+) True XLOC_014097
TCONS_00028095 lncRNA downstream 1805715 27354345 ~ 27354866 (+) True XLOC_014098
TCONS_00028103 lncRNA downstream 2338688 27887318 ~ 27892055 (+) True XLOC_014102
TCONS_00029917 lncRNA downstream 2426035 27974665 ~ 27976483 (+) True XLOC_014104
TCONS_00029918 lncRNA downstream 2565884 28114514 ~ 28187683 (+) False XLOC_014105
TCONS_00028064 mRNA upstream 13659 25476228 ~ 25512695 (+) False XLOC_014083
TCONS_00028067 mRNA upstream 20040 25504645 ~ 25506314 (+) False XLOC_014083
TCONS_00028066 mRNA upstream 21855 25497541 ~ 25504499 (+) False XLOC_014083
TCONS_00028065 mRNA upstream 33884 25478203 ~ 25492470 (+) False XLOC_014083
TCONS_00028063 mRNA upstream 59169 25465025 ~ 25467185 (+) True XLOC_014082
TCONS_00028070 mRNA downstream 100996 25649626 ~ 25653185 (+) True XLOC_014085
TCONS_00028071 mRNA downstream 422370 25971000 ~ 26156531 (+) False XLOC_014086
TCONS_00028072 mRNA downstream 523994 26072624 ~ 26156531 (+) True XLOC_014086
TCONS_00028074 mRNA downstream 792106 26340736 ~ 26378655 (+) True XLOC_014088
TCONS_00028075 mRNA downstream 874960 26423590 ~ 26629117 (+) False XLOC_014089
TCONS_00028068 other upstream 14792 25508793 ~ 25511562 (+) True XLOC_014083
TCONS_00028062 other upstream 350962 25175272 ~ 25175392 (+) True XLOC_014081
TCONS_00028035 other upstream 1613054 23913182 ~ 23913300 (+) True XLOC_014055
TCONS_00028032 other upstream 1871640 23652399 ~ 23654714 (+) False XLOC_014053
TCONS_00028073 other downstream 644192 26192822 ~ 26192936 (+) True XLOC_014087
TCONS_00028077 other downstream 1027964 26576594 ~ 26576708 (+) True XLOC_014090
TCONS_00028082 other downstream 1257136 26805766 ~ 26805882 (+) True XLOC_014093
TCONS_00028091 other downstream 1379994 26928624 ~ 26931433 (+) True XLOC_014095
TCONS_00028109 other downstream 2594505 28143135 ~ 28143254 (+) True XLOC_014106

Expression Profile

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