RNA id: TU123789


Basic Information

Item Value
RNA id TU123789
length 304
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G108829
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6203773 ~ 6204116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTTGACTGTCATTTGTGGGCCAGTCCATGTCTCATTGCATGTGTCTGGGAGGGCAGGGAGAAGGGGTTCAGAGGAACCCAGTCTCAGTGAGCCCTCCTGGGTCCTAGGTTATCAGGGAGTCCagagtcagaacagtaggtccaGACCAGGCCCACAGGGTGCTTCAGCTCCTCAGAGTAGTAAGTAGCACATCGCTCCTAATCAGcactagtgtctgtctgtccgtctgtcgcttactcactccgtctctctctccttctgtcaagCAACCAGGAAATGTCAAGTCACTATAACCGAAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123788 lncRNA upstream 241 6202315 ~ 6203532 (+) True G108828
TU123756 lncRNA upstream 4432 6195631 ~ 6199341 (+) False G108805
TU123776 lncRNA upstream 25530 6177254 ~ 6178243 (+) True G108818
TU123751 lncRNA upstream 43620 6151712 ~ 6160153 (+) False G108805
TU123743 lncRNA upstream 65941 6136775 ~ 6137832 (+) True G108802
TU123796 lncRNA downstream 11136 6215252 ~ 6216642 (+) True G108836
TU123803 lncRNA downstream 23584 6227700 ~ 6228186 (+) True G108843
TU123804 lncRNA downstream 24293 6228409 ~ 6228747 (+) True G108844
TU123805 lncRNA downstream 25002 6229118 ~ 6229353 (+) True G108845
TU123826 lncRNA downstream 61825 6265941 ~ 6266482 (+) True G108861
XM_036936180.1 mRNA upstream 109833 6092145 ~ 6093940 (+) False LOC118937376
NM_001165046.1 mRNA downstream 27253 6231369 ~ 6250042 (+) True ccdc12
XM_036936209.1 mRNA downstream 82442 6286558 ~ 6312599 (+) False cep72
XM_036936220.1 mRNA downstream 82442 6286558 ~ 6312599 (+) False cep72
XM_036936215.1 mRNA downstream 82495 6286611 ~ 6312599 (+) True cep72
XM_036936282.1 mRNA downstream 174257 6378373 ~ 6389788 (+) False trip13
TU123748 other upstream 4432 6196932 ~ 6199341 (+) True G108805
TU123712 other upstream 145438 6056996 ~ 6058335 (+) True G108775
TU123521 other upstream 201579 5999185 ~ 6002194 (+) True LOC110505679
TU123495 other upstream 244960 5953945 ~ 5958813 (+) False LOC110505637
TU123869 other downstream 77955 6282071 ~ 6285940 (+) False G108874
TU123867 other downstream 79588 6283704 ~ 6285940 (+) True G108874
TU124055 other downstream 428962 6633078 ~ 6633913 (+) False G109020
TU124056 other downstream 428962 6633078 ~ 6633913 (+) False G109020
TU124057 other downstream 428962 6633078 ~ 6633913 (+) False G109020

Expression Profile