RNA id: TU123796


Basic Information

Item Value
RNA id TU123796
length 430
lncRNA type intronic
GC content 0.42
exon number 2
gene id G108836
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6215252 ~ 6216642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATCACTGTGCTCTGGTCTTATACATAACCTTCAGGTCCGTATCACTGTGCTCTGGTCTTATACATAACCTTCAGGTCAGTATCACTGTGCTCTGGTCTTGTACATAACCTTCAGGTCAGTATCACTGTGCTCTGGTCTTGTACATAACATTCAGGTCAGTATCACTGTGCTCTGGTCTTGTACATAACCTTCAGGTCAGTATCACTGTGCTCTGGTCTTGTACATAACATTCAGGTCAGTATCACTGTGCTCTGGTCTTATACATAACATTCAGGTCAGTATCACTATGCTCTGGTCTTGTACATAACATTCAGGTCAGTATCACTGTGCTCTGGTCTTATACATAACATTCAGGTCAGTATCACTATGCTCTGGTCTTGTACATAACATTCAGGTCAGTATCACTGTGCTCTGGTCTTATACATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123789 lncRNA upstream 11136 6203773 ~ 6204116 (+) True G108829
TU123788 lncRNA upstream 11720 6202315 ~ 6203532 (+) True G108828
TU123756 lncRNA upstream 15911 6195631 ~ 6199341 (+) False G108805
TU123776 lncRNA upstream 37009 6177254 ~ 6178243 (+) True G108818
TU123751 lncRNA upstream 55099 6151712 ~ 6160153 (+) False G108805
TU123803 lncRNA downstream 11058 6227700 ~ 6228186 (+) True G108843
TU123804 lncRNA downstream 11767 6228409 ~ 6228747 (+) True G108844
TU123805 lncRNA downstream 12476 6229118 ~ 6229353 (+) True G108845
TU123826 lncRNA downstream 49299 6265941 ~ 6266482 (+) True G108861
TU123857 lncRNA downstream 62619 6279261 ~ 6280039 (+) True G108872
XM_036936180.1 mRNA upstream 121312 6092145 ~ 6093940 (+) False LOC118937376
NM_001165046.1 mRNA downstream 14727 6231369 ~ 6250042 (+) True ccdc12
XM_036936209.1 mRNA downstream 69916 6286558 ~ 6312599 (+) False cep72
XM_036936220.1 mRNA downstream 69916 6286558 ~ 6312599 (+) False cep72
XM_036936215.1 mRNA downstream 69969 6286611 ~ 6312599 (+) True cep72
XM_036936282.1 mRNA downstream 161731 6378373 ~ 6389788 (+) False trip13
TU123748 other upstream 15911 6196932 ~ 6199341 (+) True G108805
TU123712 other upstream 156917 6056996 ~ 6058335 (+) True G108775
TU123521 other upstream 213058 5999185 ~ 6002194 (+) True LOC110505679
TU123495 other upstream 256439 5953945 ~ 5958813 (+) False LOC110505637
TU123869 other downstream 65429 6282071 ~ 6285940 (+) False G108874
TU123867 other downstream 67062 6283704 ~ 6285940 (+) True G108874
TU124055 other downstream 416436 6633078 ~ 6633913 (+) False G109020
TU124056 other downstream 416436 6633078 ~ 6633913 (+) False G109020
TU124057 other downstream 416436 6633078 ~ 6633913 (+) False G109020

Expression Profile