RNA id: TU123804


Basic Information

Item Value
RNA id TU123804
length 339
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G108844
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6228409 ~ 6228747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCAATGTTATGCGATAACACTGCCTCTTAATGACCTCACACTAGTCACTCAGGGGCTCCCGAGCGGCaaagctgtctaaggcactgcatctcagtgctataggcgtcactacagatcctggttcgattccaggctgtatcacaaccggacgtgattgggagtccaatagggtggcgcacaattggcccagcgtcatccgggttagggtttggccggggtaagccgacattgtaaataagaatttgttcttaactgccttgcctagttaaataaaaacgtTATGATTATCAATCTAATCCATCATACAGTCAATTTCCTCTGTCCCATAATCTGTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123803 lncRNA upstream 223 6227700 ~ 6228186 (+) True G108843
TU123796 lncRNA upstream 11767 6215252 ~ 6216642 (+) True G108836
TU123789 lncRNA upstream 24293 6203773 ~ 6204116 (+) True G108829
TU123788 lncRNA upstream 24877 6202315 ~ 6203532 (+) True G108828
TU123756 lncRNA upstream 29068 6195631 ~ 6199341 (+) False G108805
TU123805 lncRNA downstream 371 6229118 ~ 6229353 (+) True G108845
TU123826 lncRNA downstream 37194 6265941 ~ 6266482 (+) True G108861
TU123857 lncRNA downstream 50514 6279261 ~ 6280039 (+) True G108872
TU123871 lncRNA downstream 52803 6281550 ~ 6281898 (+) True G108876
TU123864 lncRNA downstream 85852 6314599 ~ 6318260 (+) False G108873
XM_036936180.1 mRNA upstream 134469 6092145 ~ 6093940 (+) False LOC118937376
NM_001165046.1 mRNA downstream 2622 6231369 ~ 6250042 (+) True ccdc12
XM_036936209.1 mRNA downstream 57811 6286558 ~ 6312599 (+) False cep72
XM_036936220.1 mRNA downstream 57811 6286558 ~ 6312599 (+) False cep72
XM_036936215.1 mRNA downstream 57864 6286611 ~ 6312599 (+) True cep72
XM_036936282.1 mRNA downstream 149626 6378373 ~ 6389788 (+) False trip13
TU123748 other upstream 29068 6196932 ~ 6199341 (+) True G108805
TU123712 other upstream 170074 6056996 ~ 6058335 (+) True G108775
TU123521 other upstream 226215 5999185 ~ 6002194 (+) True LOC110505679
TU123495 other upstream 269596 5953945 ~ 5958813 (+) False LOC110505637
TU123869 other downstream 53324 6282071 ~ 6285940 (+) False G108874
TU123867 other downstream 54957 6283704 ~ 6285940 (+) True G108874
TU124055 other downstream 404331 6633078 ~ 6633913 (+) False G109020
TU124056 other downstream 404331 6633078 ~ 6633913 (+) False G109020
TU124057 other downstream 404331 6633078 ~ 6633913 (+) False G109020

Expression Profile