RNA id: TU123900


Basic Information

Item Value
RNA id TU123900
length 666
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G108897
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6362904 ~ 6364789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATGACACAGTACTGTGTAAAAACACAACCTGTGGCGACTTTATTCTCTTAAGTATAGCACACATACAAATAATCTGTACAATCATGATGACCTTCCACAACATGTCTGAGGTTCTCTCTCGTTGTCCCCGGTGTGTTGAGAGCACAGAGtcagacaacaaaacaaccaGTGTGGTTAAATACCGGACGTCAGATCAGCTCTGAGTAGAAGTTTCCTCtgaaccacagatctaggatcagattacccatCAAACAATGTCTGACCCCAGACCAGTAGTTAGAGGCATCTTCTACCATCTCCCTAGTAGTTTCTCAATAACAGTATCGCAATACTCAGAAGTCTTAATGTTGGATACACCAGAGAcacatttgtttgtttttcaagCTACAGAAAACAATATTTTAGATAAAGCATGTTTTTAAAGAGTTAAAACACTTTTGTTTCCTTTTTTGCCTTGGAAAGTTGAGTATCATAGTATAGTGATACTGGTATTGTGACCAGAGCTACCCCAGTTAGAGGCAACTTGTCAGTGTGTGGGTTAGCTGTTGAATGTGGAGCCTGGCTCTGGGGACTGGAGGAACTCATAGGTCAGCTGTTGGATGTGGAGCCTGGCTCTGGAGACTGGAGGAACTCATAGGTCAGCTGTTGGATGTGGAGCCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123884 lncRNA upstream 18381 6334097 ~ 6344523 (+) True G108888
TU123882 lncRNA upstream 29645 6332029 ~ 6333259 (+) True G108887
TU123861 lncRNA upstream 44644 6314647 ~ 6318260 (+) False G108873
TU123916 lncRNA downstream 22711 6386330 ~ 6386720 (+) True G108911
TU123957 lncRNA downstream 70418 6434037 ~ 6436005 (+) False G108943
TU123958 lncRNA downstream 71467 6435086 ~ 6436005 (+) True G108943
TU123979 lncRNA downstream 101137 6464756 ~ 6471975 (+) True G108951
TU124021 lncRNA downstream 192422 6556041 ~ 6623583 (+) True G108991
XM_036936209.1 mRNA upstream 50305 6286558 ~ 6312599 (+) False cep72
XM_036936220.1 mRNA upstream 50305 6286558 ~ 6312599 (+) False cep72
XM_036936215.1 mRNA upstream 50305 6286611 ~ 6312599 (+) True cep72
NM_001165046.1 mRNA upstream 112862 6231369 ~ 6250042 (+) True ccdc12
XM_036936191.1 mRNA upstream 268964 6092415 ~ 6093940 (+) False LOC118937376
XM_036936282.1 mRNA downstream 14754 6378373 ~ 6389788 (+) False trip13
XM_036936288.1 mRNA downstream 14754 6378373 ~ 6389788 (+) True trip13
XM_036936297.1 mRNA downstream 39057 6402676 ~ 6499698 (+) True nkd2b
XM_036936302.1 mRNA downstream 181749 6545368 ~ 6629469 (+) False zgc:158766
XM_036936305.1 mRNA downstream 181750 6545369 ~ 6629467 (+) False zgc:158766
TU123869 other upstream 76964 6282071 ~ 6285940 (+) False G108874
TU123867 other upstream 76964 6283704 ~ 6285940 (+) True G108874
TU123748 other upstream 163563 6196932 ~ 6199341 (+) True G108805
TU123712 other upstream 304569 6056996 ~ 6058335 (+) True G108775
TU123521 other upstream 360710 5999185 ~ 6002194 (+) True LOC110505679
TU124055 other downstream 269459 6633078 ~ 6633913 (+) False G109020
TU124056 other downstream 269459 6633078 ~ 6633913 (+) False G109020
TU124057 other downstream 269459 6633078 ~ 6633913 (+) False G109020
TU124060 other downstream 269459 6633078 ~ 6633913 (+) False G109020
TU124062 other downstream 269459 6633078 ~ 6633913 (+) False G109020

Expression Profile