RNA id: TU123958


Basic Information

Item Value
RNA id TU123958
length 502
lncRNA type intronic
GC content 0.45
exon number 2
gene id G108943
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6434037 ~ 6436005 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAACATCACCTTGTCCTCTATTAGGTAGTGTTAACATCATCACCTAGTCCTCTGTTAGGTAGTGTTAACATCACCTAGTCCTCTGTTAGGTAGTGCACCACCTAGTCCTCTGTTAGGTAGTGTTAACATCCCCTAGTCCTCTGTTAGGTAGTGGTAACATCATCACCTAGTCCTCTGTTAGGTAGTGTTAACATCCCCTAGTCCTCTGTTAGGTAGTGGTAACATCATCCCCTAGTCCTATGTTAGGTAGTGTTAACACCACCTAGTCCTCTGTTAGGTAGTGTTAACATCACCTAGTCCTCTGTTAGGTAGTGGTAACAtcagggaggagggaaagaggagacaTGAAAGTGTGATGCGGTTGTTTCACTCCTTACTTTGGTACGCAAATGTGTTATGTTGTTTGAGGGTCAGAggatgtgtgtgcatgcttgcttgagtgtgtgtatgtgcgtgtgtgttagagagagagagtgtgtgtgtgtgtgtgtaagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123916 lncRNA upstream 48366 6386330 ~ 6386720 (+) True G108911
TU123897 lncRNA upstream 70297 6362904 ~ 6364789 (+) False G108897
TU123900 lncRNA upstream 71467 6362904 ~ 6363619 (+) True G108897
TU123884 lncRNA upstream 90563 6334097 ~ 6344523 (+) True G108888
TU123882 lncRNA upstream 101827 6332029 ~ 6333259 (+) True G108887
TU123979 lncRNA downstream 28751 6464756 ~ 6471975 (+) True G108951
TU124021 lncRNA downstream 120036 6556041 ~ 6623583 (+) True G108991
TU124024 lncRNA downstream 122890 6558895 ~ 6559507 (+) True G108994
TU124035 lncRNA downstream 135613 6571618 ~ 6572130 (+) True G109003
TU124043 lncRNA downstream 152159 6588164 ~ 6588628 (+) True G109011
XM_036936282.1 mRNA upstream 45298 6378373 ~ 6389788 (+) False trip13
XM_036936288.1 mRNA upstream 45298 6378373 ~ 6389788 (+) True trip13
XM_036936209.1 mRNA upstream 122487 6286558 ~ 6312599 (+) False cep72
XM_036936302.1 mRNA downstream 109363 6545368 ~ 6629469 (+) False zgc:158766
XM_036936305.1 mRNA downstream 109364 6545369 ~ 6629467 (+) False zgc:158766
XM_036936299.1 mRNA downstream 109364 6545369 ~ 6629468 (+) True zgc:158766
XM_036936309.1 mRNA downstream 183105 6619110 ~ 6621596 (+) True LOC118937387
XM_036936327.1 mRNA downstream 209211 6645216 ~ 6649794 (+) False LOC110505995
TU123869 other upstream 149146 6282071 ~ 6285940 (+) False G108874
TU123867 other upstream 149146 6283704 ~ 6285940 (+) True G108874
TU123748 other upstream 235745 6196932 ~ 6199341 (+) True G108805
TU123712 other upstream 376751 6056996 ~ 6058335 (+) True G108775
TU123521 other upstream 432892 5999185 ~ 6002194 (+) True LOC110505679
TU124055 other downstream 197073 6633078 ~ 6633913 (+) False G109020
TU124056 other downstream 197073 6633078 ~ 6633913 (+) False G109020
TU124057 other downstream 197073 6633078 ~ 6633913 (+) False G109020
TU124060 other downstream 197073 6633078 ~ 6633913 (+) False G109020
TU124062 other downstream 197073 6633078 ~ 6633913 (+) False G109020

Expression Profile