RNA id: TU124024


Basic Information

Item Value
RNA id TU124024
length 531
lncRNA type intronic
GC content 0.41
exon number 2
gene id G108994
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6558895 ~ 6559507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTAAACTGGTTCTGCTGTTCCAGTCCATATTCTGGTTCTGCTGTTCCAGTCCATATTCTGGTGTTTAGGGGTGTAAAAGCAGGTAAACTGGTTCTGCTGTTCCAGTCCATATTCTGGTTCTGCTGTTCCAGTCCATATTCTGGTGTTTAGTGATGTAAAAGCAAGTAAACTGGTTCTGCTGTTCCAGTCCATATTCTGGTTCTGCTGTTCCAGTCCATATTCTGGTTCTGCTGTTCCAGTCCATATTCTGGTGTTTAGTGGTGTAAAAGCAGGTAAACTGGTTCTGCTGTTCCAGTCCATATTCTGGTTCTGCTGTTCCAGTCCATATTCTGGTGTTTAGTGGTGTAAAAGCAGGTAAACTGGTTCTGCTGTTCCAGTCCATATTCTGGTTCTGCTGTTCCAGTCCATATTCTGGTGTTTAGTGGTGTAAAAGCAGGTAAACTGGTTCTGCTGTTCCAGTCCATATTCTGGTTCTGCTGTTCCAGTCCATATTCTGGTGTTtagtggtggaaaactgagcaggTTGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123979 lncRNA upstream 86920 6464756 ~ 6471975 (+) True G108951
TU123957 lncRNA upstream 122890 6434037 ~ 6436005 (+) False G108943
TU123958 lncRNA upstream 122890 6435086 ~ 6436005 (+) True G108943
TU123916 lncRNA upstream 172175 6386330 ~ 6386720 (+) True G108911
TU123900 lncRNA upstream 195276 6362904 ~ 6363619 (+) True G108897
TU124035 lncRNA downstream 12111 6571618 ~ 6572130 (+) True G109003
TU124043 lncRNA downstream 28657 6588164 ~ 6588628 (+) True G109011
TU124048 lncRNA downstream 39416 6598923 ~ 6600166 (+) True G109015
TU124052 lncRNA downstream 64163 6623670 ~ 6624211 (+) True G109018
TU124053 lncRNA downstream 65449 6624956 ~ 6626013 (+) True G109019
XM_036936297.1 mRNA upstream 59197 6402676 ~ 6499698 (+) True nkd2b
XM_036936282.1 mRNA upstream 169107 6378373 ~ 6389788 (+) False trip13
XM_036936288.1 mRNA upstream 169107 6378373 ~ 6389788 (+) True trip13
XM_036936220.1 mRNA upstream 246296 6286558 ~ 6312599 (+) False cep72
XM_036936309.1 mRNA downstream 59603 6619110 ~ 6621596 (+) True LOC118937387
XM_036936327.1 mRNA downstream 85709 6645216 ~ 6649794 (+) False LOC110505995
XM_036936317.1 mRNA downstream 85973 6645480 ~ 6649794 (+) False LOC110505995
XM_036936407.1 mRNA downstream 93695 6653202 ~ 6679166 (+) False ptdss1a
XM_036936359.1 mRNA downstream 93697 6653204 ~ 6679166 (+) False ptdss1a
TU123869 other upstream 272955 6282071 ~ 6285940 (+) False G108874
TU123867 other upstream 272955 6283704 ~ 6285940 (+) True G108874
TU123748 other upstream 359554 6196932 ~ 6199341 (+) True G108805
TU123712 other upstream 500560 6056996 ~ 6058335 (+) True G108775
TU123521 other upstream 556701 5999185 ~ 6002194 (+) True LOC110505679
TU124055 other downstream 73571 6633078 ~ 6633913 (+) False G109020
TU124056 other downstream 73571 6633078 ~ 6633913 (+) False G109020
TU124057 other downstream 73571 6633078 ~ 6633913 (+) False G109020
TU124060 other downstream 73571 6633078 ~ 6633913 (+) False G109020
TU124062 other downstream 73571 6633078 ~ 6633913 (+) False G109020

Expression Profile