RNA id: TU124063


Basic Information

Item Value
RNA id TU124063
length 799
RNA type TUCP
GC content 0.43
exon number 2
gene id G109020
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6633078 ~ 6633913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtctctctggctgttcTTATCGTTACCAGTACTATGTGTCTCTCTGGCTGTTCTTATCGTTACCAGTACTATGTGTCTCTCTGGCTGTTCTTATCGTTACCAGTACTATGTGTCTCTCTGGCTGTTCTTATCGTTACCAGTACTATGTGTCTCTCTGGCTGTTCTTATCATTACCAGTACTATGTGTCTCTCTAGCTGTTCTTATCGTTACCAGTACTATGTGTCTCTCTGGCTGTTCTTATCGTTACCAGTACTATGTGTCTCTCTGGCTGTTCTTATCGTTACCAGTactatgtgtctgtctggctgttcTTATCGTTACTAGTactatgtgtctgtctggctgttcTTATCGTTACCAGTACTATGTGTCTCTCTGGCTGTTCTTATCGTTACCAGTactatgtgtctgtctggctgttcTTATCGTTACTAGTactatgtgtctgtctggctgttcTTATCGTTACCAGTACTATGTGTCTCTCTGGCTGTTCTTATCGTTACCAGTACcatgtgtctgtctggctgttcTTATCGTTACCAGTACCATGTGTCTCTTTGGCTGTTCTTATCGTTACCAGTactatgtgtctgtctggctgttcTTATCGTTACCAGTACcatgtgtctgtctggctgttcTTATCGTTACCAGTACCATGTGTCTCTTTGGCTGTTCTTATCGTTACCAGTACTATGTGTCTCTCTGGCTGTTCTTATCGTTACCAGTACTATGTGTCTCTCTGGCTGTTCTTATCGTTACCAGTACTATGTGTCTCTCTGTACAGAGTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124053 lncRNA upstream 7065 6624956 ~ 6626013 (+) True G109019
TU124052 lncRNA upstream 8867 6623670 ~ 6624211 (+) True G109018
TU124048 lncRNA upstream 32912 6598923 ~ 6600166 (+) True G109015
TU124043 lncRNA upstream 44450 6588164 ~ 6588628 (+) True G109011
TU124035 lncRNA upstream 60948 6571618 ~ 6572130 (+) True G109003
TU124074 lncRNA downstream 13130 6647043 ~ 6649067 (+) True LOC110505995
TU124081 lncRNA downstream 29356 6663269 ~ 6664730 (+) True G109030
TU124083 lncRNA downstream 36785 6670698 ~ 6672100 (+) True G109032
TU123939 lncRNA downstream 75211 6709124 ~ 6753929 (+) True G108930
TU123943 lncRNA downstream 158098 6792011 ~ 6793179 (+) True G108934
XM_036936302.1 mRNA upstream 3609 6545368 ~ 6629469 (+) False zgc:158766
XM_036936299.1 mRNA upstream 3610 6545369 ~ 6629468 (+) True zgc:158766
XM_036936305.1 mRNA upstream 3611 6545369 ~ 6629467 (+) False zgc:158766
XM_036936309.1 mRNA upstream 11482 6619110 ~ 6621596 (+) True LOC118937387
XM_036936297.1 mRNA upstream 133380 6402676 ~ 6499698 (+) True nkd2b
XM_036936327.1 mRNA downstream 11303 6645216 ~ 6649794 (+) False LOC110505995
XM_036936317.1 mRNA downstream 11567 6645480 ~ 6649794 (+) False LOC110505995
XM_036936407.1 mRNA downstream 19289 6653202 ~ 6679166 (+) False ptdss1a
XM_036936359.1 mRNA downstream 19291 6653204 ~ 6679166 (+) False ptdss1a
XM_036936370.1 mRNA downstream 19529 6653442 ~ 6679122 (+) False ptdss1a
TU123869 other upstream 347138 6282071 ~ 6285940 (+) False G108874
TU123867 other upstream 347138 6283704 ~ 6285940 (+) True G108874
TU123748 other upstream 433737 6196932 ~ 6199341 (+) True G108805
TU123712 other upstream 574743 6056996 ~ 6058335 (+) True G108775
TU123521 other upstream 630884 5999185 ~ 6002194 (+) True LOC110505679
TU124135 other downstream 222173 6856086 ~ 6868976 (+) True rbm24b
TU125016 other downstream 274634 6908547 ~ 6911205 (+) True malsu1
TU125022 other downstream 307603 6941516 ~ 6943083 (+) True LOC110535156
TU125129 other downstream 501334 7135247 ~ 7140979 (+) False G109821
TU125130 other downstream 501334 7135247 ~ 7140979 (+) False G109821

Expression Profile