RNA id: TU125095


Basic Information

Item Value
RNA id TU125095
length 280
lncRNA type intronic
GC content 0.43
exon number 2
gene id G109792
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7064419 ~ 7064760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAGAATACAGTCAGCCCATATGGTGTTGGGTAGTCTGAATACAGTCAGCCCACATGGTGTTGGGCAGTTATAATACAGTCAGCCCATATGGTGTTGGGCAGTTATAATACAGTTAGCCCATATGGTGTTGGGCAGTTAGGTTACAGTCAGCCCATATGGGTAGTTAGAATACGTACAGGTGAACTGAGtgtccttagcttaatgatgagctttgagggcactacggtgttgaaccctgagctgtagtcaatgaatagcattctcttttttaaaacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125086 lncRNA upstream 13859 7049329 ~ 7050560 (+) True G109783
TU125085 lncRNA upstream 26579 7037444 ~ 7037840 (+) True G109782
TU125074 lncRNA upstream 65239 6998878 ~ 6999180 (+) False G109772
TU125075 lncRNA upstream 65239 6998878 ~ 6999180 (+) True G109772
TU125058 lncRNA upstream 92344 6971786 ~ 6972075 (+) True G109758
TU125096 lncRNA downstream 5666 7070426 ~ 7071439 (+) True G109793
TU125063 lncRNA downstream 24532 7089292 ~ 7108061 (+) True G109761
TU125100 lncRNA downstream 27666 7092426 ~ 7117995 (+) True G109797
TU125064 lncRNA downstream 39295 7104055 ~ 7105297 (+) True G109762
TU125068 lncRNA downstream 51668 7116428 ~ 7129520 (+) True G109766
XM_036936661.1 mRNA upstream 10153 7030625 ~ 7054266 (+) False LOC110535127
XM_036936663.1 mRNA upstream 10153 7033666 ~ 7054266 (+) False LOC110535127
XM_036936658.1 mRNA upstream 10153 7033825 ~ 7054266 (+) False LOC110535127
XM_036936662.1 mRNA upstream 10153 7033846 ~ 7054266 (+) False LOC110535127
XM_036936660.1 mRNA upstream 10153 7034560 ~ 7054266 (+) True LOC110535127
XM_036936669.1 mRNA downstream 2523 7067283 ~ 7079077 (+) False LOC110535004
XM_036936665.1 mRNA downstream 2525 7067285 ~ 7079077 (+) False LOC110535004
XM_036936664.1 mRNA downstream 2526 7067286 ~ 7079077 (+) True LOC110535004
XM_036936692.1 mRNA downstream 217670 7282430 ~ 7304709 (+) False pde11al
XM_036936698.1 mRNA downstream 294145 7358905 ~ 7369148 (+) False cbx3b
TU125022 other upstream 121336 6941516 ~ 6943083 (+) True LOC110535156
TU125016 other upstream 153214 6908547 ~ 6911205 (+) True malsu1
TU124135 other upstream 195443 6856086 ~ 6868976 (+) True rbm24b
TU124063 other upstream 430506 6633078 ~ 6633913 (+) False G109020
TU125129 other downstream 70487 7135247 ~ 7140979 (+) False G109821
TU125130 other downstream 70487 7135247 ~ 7140979 (+) False G109821
TU125259 other downstream 238268 7303028 ~ 7304645 (+) True pde11al
TU125753 other downstream 551199 7615959 ~ 7696242 (+) False creb5b
TU125754 other downstream 637222 7701982 ~ 7706489 (+) True creb5b

Expression Profile