RNA id: TU125068


Basic Information

Item Value
RNA id TU125068
length 1900
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G109766
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7116428 ~ 7129520 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actacatgttgaccagacattccattcagtagactacattacatgttgaccagacgttccattcagtagactacatgttgaccagacattccattcagtagactacattacatgttgaccagacgttccattcagtagactacatgttgaccagatgttccattcagtagactacatgttgaccagacattccattcagtacactacatgttgaccagacgttccattcagtagactacatgttgaccagacattccattcagtagactacattacatgttgaccagacgttccattcagtagactacatgttgaccagatgttccattcagtagactacatgttgaccagacattccattcagtacactacatgttgaccagacgttccattcagtagactacatgttgaccagacgttccattcagtagactacatgttgaccagacattccattcagtagactacattacatttTGACCggacgttccattcagtagactacatgttgaccagacattccattcagtagactacattacatgttgaccagatgttccattcagtagactacattacatgttgaccagacgttccattcagtagactacatgttgaccagatgttccattcagtagactacatgttgaccagacgttccattcagtacactacatgttgaccagacgttccattcagtagactacatgttgaccagacgttccattcagtagactacatgttgaccagacattccattcagtagactacatgttgaccagacattccattcagtagactacattacatgttgaccggacgttccattcagtagactacattacatgttgaccagatgttccattcagtagactacatgttgaccagacgttccattcagtacactacatgttgaccagacgttccattcagtagactacatgttgaccagacgttccattcagtagactacatgttgactagacattccattcagtagactacatgttgaccagacgttccattcagtacactacatgttgaccagacgttccattcagtagactacattacatgttgaccagatgttccattcagtagactacatgttgACCGCTAAACAGGAGACATTACCCTCCACTGGCATTATTACCTTTGTTCAGATTTAGGGGACTGTTGGTATCAAAGTCGCCTCCCAGGTCCATAAATCCATCTACTTCCAACCCCTCCTTTGACCTATCTATTTCAAAGCCCCCATTGTTGCAGATGAGGCACAGCTCATTGCATTTGACGTAGAGTTCAATCAGACTGTAGGCCATGACAGTATTTGCAGGAATACCCAGTGACACATCACTATCTGTCTGAGTACTGCCGCTGTGCTTCATAGAGGCCTTCCCGCTCAGGAACACACAGGCGCTCACGTTGGCTCCTACATTGCCATGCTTAAGGACATTGTTTGTGACCGGGCAAGGTAGTGACGTCATAATCCTCTCCGTCAAGACGCCTAACACTGCCCTGGGATTCGCACGGGTCTGCTTGATCACAGGATGGGACATGTCCAGAACTCTGCAGGAGGGACACATtttaggtcatatttcatagaaatctggaaacactggaaaGCTACTTTAAAAGTAAACaaatggatgtaccaatcacAGATTGTCCCTTTAAGCTAAACTAGTAGTGAAAACAGTGAGGAGGTAGTTTAAGTTTCAGGAAGTTGCTAAACCAGTACAGTTCCACTTCTTTCTTGTCTGAAATCACTTCAACCTGAAAATGTCCTTTTTACACAAAAGATACCTGCCTGATGTCATTGCAACCAGTTTTGCTCGCTGGTCTTGGGTCTTGGACTCCTTGGGAAGGTGAACTGTATGATGTATTATGACTGTATTGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125063 lncRNA upstream 8367 7089292 ~ 7108061 (+) True G109761
TU125064 lncRNA upstream 11131 7104055 ~ 7105297 (+) True G109762
TU125066 lncRNA upstream 26205 6997217 ~ 7090223 (+) True G109764
TU125090 lncRNA upstream 37030 7054449 ~ 7079398 (+) True G109787
TU125096 lncRNA upstream 44989 7070426 ~ 7071439 (+) True G109793
TU125128 lncRNA downstream 8879 7138399 ~ 7140979 (+) False G109821
TU125133 lncRNA downstream 8879 7138399 ~ 7140979 (+) True G109821
TU125135 lncRNA downstream 11669 7141189 ~ 7141711 (+) True G109823
TU125142 lncRNA downstream 17181 7146701 ~ 7148101 (+) False G109828
TU125144 lncRNA downstream 17181 7146701 ~ 7147554 (+) True G109828
XM_036936669.1 mRNA upstream 37351 7067283 ~ 7079077 (+) False LOC110535004
XM_036936665.1 mRNA upstream 37351 7067285 ~ 7079077 (+) False LOC110535004
XM_036936664.1 mRNA upstream 37351 7067286 ~ 7079077 (+) True LOC110535004
XM_036936662.1 mRNA upstream 62162 7033846 ~ 7054266 (+) False LOC110535127
XM_036936692.1 mRNA downstream 152910 7282430 ~ 7304709 (+) False pde11al
XM_036936698.1 mRNA downstream 229385 7358905 ~ 7369148 (+) False cbx3b
XM_036936696.1 mRNA downstream 229386 7358906 ~ 7369148 (+) True cbx3b
XM_036936694.1 mRNA downstream 239823 7369343 ~ 7377095 (+) True snx10b
XM_036936783.1 mRNA downstream 366663 7496183 ~ 7531274 (+) False tax1bp1b
TU125022 other upstream 173345 6941516 ~ 6943083 (+) True LOC110535156
TU125016 other upstream 205223 6908547 ~ 6911205 (+) True malsu1
TU124135 other upstream 247452 6856086 ~ 6868976 (+) True rbm24b
TU124063 other upstream 482515 6633078 ~ 6633913 (+) False G109020
TU125129 other downstream 5727 7135247 ~ 7140979 (+) False G109821
TU125130 other downstream 5727 7135247 ~ 7140979 (+) False G109821
TU125259 other downstream 173508 7303028 ~ 7304645 (+) True pde11al
TU125753 other downstream 486439 7615959 ~ 7696242 (+) False creb5b
TU125754 other downstream 572462 7701982 ~ 7706489 (+) True creb5b

Expression Profile