RNA id: TU125187


Basic Information

Item Value
RNA id TU125187
length 450
lncRNA type intronic
GC content 0.43
exon number 4
gene id G109867
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7206860 ~ 7208949 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAATAGGAGGAGGATATTATTGTAGAGGAgtaaggaggaataggaggaggatattattgtagaggaggaaggaggaataggaGGAGGATATTAttgtagaggaggaaggaggaataggaggaggatattaatgtagaggagtaaggaggaataggaggaggatattaatgtagaggaggaaggaggcATAGGTGGAGGATATTaatgtagaggaggaaggaggaataggaggaggatattaatgtagaggagtaaggaggaataggaggaggatattaatgtagaggaggaaggaggcATAGGTGGAGGATATTAATgtagaggaggaaggaggaataggaggaggatatTAATGTAGAGGAGGAAGGATGCATAGGTGGAGGATATTaatgtagaggaggaaggaggaataggaggaggatattaatgtagaggaggaaggaggcAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125176 lncRNA upstream 11785 7194593 ~ 7195075 (+) True G109857
TU125172 lncRNA upstream 17006 7189638 ~ 7189854 (+) True G109854
TU125171 lncRNA upstream 18471 7188014 ~ 7188389 (+) True G109853
TU125065 lncRNA upstream 22148 7182153 ~ 7184712 (+) True G109763
TU125160 lncRNA upstream 41503 7163991 ~ 7165357 (+) True G109842
TU125207 lncRNA downstream 17698 7226647 ~ 7227034 (+) True G109885
TU125237 lncRNA downstream 44825 7253774 ~ 7254702 (+) True G109901
TU125242 lncRNA downstream 53239 7262188 ~ 7263982 (+) False G109905
TU125241 lncRNA downstream 53519 7262468 ~ 7263982 (+) True G109905
TU125244 lncRNA downstream 56445 7265394 ~ 7265722 (+) True G109907
XM_036936669.1 mRNA upstream 127783 7067283 ~ 7079077 (+) False LOC110535004
XM_036936665.1 mRNA upstream 127783 7067285 ~ 7079077 (+) False LOC110535004
XM_036936664.1 mRNA upstream 127783 7067286 ~ 7079077 (+) True LOC110535004
XM_036936662.1 mRNA upstream 152594 7033846 ~ 7054266 (+) False LOC110535127
XM_036936692.1 mRNA downstream 73481 7282430 ~ 7304709 (+) False pde11al
XM_036936698.1 mRNA downstream 149956 7358905 ~ 7369148 (+) False cbx3b
XM_036936696.1 mRNA downstream 149957 7358906 ~ 7369148 (+) True cbx3b
XM_036936694.1 mRNA downstream 160394 7369343 ~ 7377095 (+) True snx10b
XM_036936783.1 mRNA downstream 287234 7496183 ~ 7531274 (+) False tax1bp1b
TU125129 other upstream 65881 7135247 ~ 7140979 (+) False G109821
TU125130 other upstream 65881 7135247 ~ 7140979 (+) False G109821
TU125022 other upstream 263777 6941516 ~ 6943083 (+) True LOC110535156
TU125016 other upstream 295655 6908547 ~ 6911205 (+) True malsu1
TU124135 other upstream 337884 6856086 ~ 6868976 (+) True rbm24b
TU125259 other downstream 94079 7303028 ~ 7304645 (+) True pde11al
TU125753 other downstream 407010 7615959 ~ 7696242 (+) False creb5b
TU125754 other downstream 493033 7701982 ~ 7706489 (+) True creb5b
TU126124 other downstream 689647 7898596 ~ 7935137 (+) True G110644
TU126159 other downstream 864417 8073366 ~ 8103920 (+) True G110674

Expression Profile