RNA id: TCONS_00028093


Basic Information

Item Value
RNA id TCONS_00028093
length 1928
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_014098
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 27339848 ~ 27358545 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATTCGTCGCGAGTTGATGACGTTGTAGACAATCTATCTGGCAGGTGCAGTCAAATCCAACTGCTTCAAACAGTGTTTCGAGAATGACAGAGAACGATGTTGATAACGAGCTGTTGGACTATGAGGAGGATGAGGTAGATGCTGGTGGTGCAGGGGACGCAGGCCTTGGACACAGCGATGGCATCATATCCATCAGGAAAGAAGGCGTCAAAGGGTCATATGTGTCCATCCACTCCTCAGGGTTCAGAGATTTCCTTCTCAAACCAGAACTCCTAAGAGCGATAGTGGACTGCGGATTTGAACATCCATCTGAGGttcagcaTGAATGCATTCCTCAGGCCATCTTGGGAATGGATGTTTTATGTCAGGCCAAGTCTGGAATGGGGAAGACAGCTGTCTTTGTGTTGGCCACCCTTCAGCAGCTGGAGCCTGTGACTGGTCAGGTGTCAGTGCTGGTGATGTGTCACACACGAGAGCTGGCATTCCAGATCAGTAAAGAGTACGAGCGCTTCTCTAAATACATGCCCAGTGTCAAGGTGGCAGTATTCTTTGGTGGTTTGTCCATAAAGAAGGACGAGGAGGTGCTGAAGAAGGAGAGTCCTCATGTGGTGGTGGGAACTCCTGGACGGATTCTAGCTCTGTCCCGCAACAAGAGTCTCAACCTGCGCCACATCAAACACTTCATTCTGGATGAATGTGATAAGATGCTGGAGCAACTTGACATGCGTCGGGATGTCCAAGAAATCTTTCGAATGACCCCTCATGAGAAGCAGGTCATGATGTTCAGTGCCACCCTGAGCAAAGAGATCCGTCCTGTCTGCAGAAAGTTCATGCAAGATCCGATGGAAATTTTTGTGGACGACGAGACCAAGTTGACACTTCACGGCCTCCAGCAGTACTACGTCAAGCTGAAGGACAACGAGAAGAACAGGAAGCTCTTTGATCTCCTGGATGTGTTGGAGTTCAACCAGGTGGTGATCTTTGTGAAGTCGGTGCAGCGTTGTATTGCTCTCGCTCAGTTGCTGGTGGAGCAAAATTTCCCTGCCATTGCCATTCATAGAGCAATGCCCCAAGACGAAAGaCTAGCTCGATATCAGCAATTTAAAGATTTCCAGAGAAGGATCCTGGTAGCCACTAATCTGTTTGGCCGAGGTATGGACATCGAAAGAGTCAACATTGCCTTTAACTACGACATGCCTGAAGACTCTGACACGTACCTGCACAGGGTTGCACGGGCTGGCAGATTCGGAACAAAAGGTCTGGCCATCACCTTTGTGTCCGATGAAAATGATGCCCGCACTTTGAATGACGTTCAGGACAGGTTTGAGGTGAACATCAGTGAACTTCCAGAGGAGATTGACATCTCATCATACATTGAACAAACACGATAAAGATGACAACACTAAATGCAGGAGTTTCTTCAGAAGGATGCATGGGATTGTAGCATTTGATAGCAATTGAGTTTGTATTTCACTGTTCCAGTGTTAGTGAATACTTCTATGGCTCACATCGCTGCGTTATCCAGTATTGTGGTGGTTTCCTGACGCCTTCTTGGTTTCGTTTTTGCTTATTGAAAGttaataaatgcaatattttgttttttatgactttttttccTTTCGATATGAATTATTTTGTGTTTGGGatgtttgtttttactttgtttttaatgAAGAGATATACTTTATCATTTCTGTTGTGAGAGGAAGAGTTCTCATTTTTGGATTATAATGGGCTACACAGTTGACTGCAGTGAAGTAGAATTGATCAAAAGTTACTAAATATATTAGCAGTGTATGCTGAATGCTTGTTACCAGTGGAGTAGGtatttaaaacaatgtttgttCATTCAGTTGTCAACTGGCAGGCCACTTTGTTTAAACTACTCAATGCTTGTTAAACCAAATAAAGTATTGTTTGATTTACA

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006406 mRNA export from nucleus biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03015 mRNA surveillance pathway
ko03019 Messenger RNA biogenesis
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040426-1259 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in mRNA export from nucleus and mRNA splicing, via spliceosome. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human DDX39B (DExD-box helicase 39B).

Ensembl:

ensembl_id ENSDART00000052355

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029916 lncRNA upstream 298320 27033873 ~ 27041528 (+) True XLOC_014097
TCONS_00028060 lncRNA upstream 2187271 25151416 ~ 25152577 (+) True XLOC_014079
TCONS_00029915 lncRNA upstream 2278881 25003517 ~ 25060967 (+) True XLOC_014078
TCONS_00029914 lncRNA upstream 2356340 24959229 ~ 24983508 (+) True XLOC_014077
TCONS_00028059 lncRNA upstream 2404553 24922531 ~ 24935295 (+) True XLOC_014076
TCONS_00028103 lncRNA downstream 529636 27887318 ~ 27892055 (+) True XLOC_014102
TCONS_00029917 lncRNA downstream 616983 27974665 ~ 27976483 (+) True XLOC_014104
TCONS_00029918 lncRNA downstream 756832 28114514 ~ 28187683 (+) False XLOC_014105
TCONS_00029919 lncRNA downstream 758123 28115805 ~ 28195442 (+) False XLOC_014105
TCONS_00029920 lncRNA downstream 758219 28115901 ~ 28187683 (+) False XLOC_014105
TCONS_00028092 mRNA upstream 315829 27019432 ~ 27024019 (+) True XLOC_014096
TCONS_00028087 mRNA upstream 407019 26922780 ~ 26932829 (+) False XLOC_014095
TCONS_00028086 mRNA upstream 407019 26922780 ~ 26932829 (+) False XLOC_014095
TCONS_00028090 mRNA upstream 407854 26923288 ~ 26931994 (+) False XLOC_014095
TCONS_00028089 mRNA upstream 408551 26923274 ~ 26931297 (+) False XLOC_014095
TCONS_00028096 mRNA downstream 90943 27448625 ~ 27453644 (+) True XLOC_014099
TCONS_00028097 mRNA downstream 121881 27479563 ~ 27506368 (+) False XLOC_014100
TCONS_00028098 mRNA downstream 121908 27479590 ~ 27515651 (+) False XLOC_014100
TCONS_00028099 mRNA downstream 122156 27479838 ~ 27506368 (+) True XLOC_014100
TCONS_00028100 mRNA downstream 231519 27589201 ~ 27608549 (+) True XLOC_014101
TCONS_00028091 other upstream 408415 26928624 ~ 26931433 (+) True XLOC_014095
TCONS_00028082 other upstream 533966 26805766 ~ 26805882 (+) True XLOC_014093
TCONS_00028077 other upstream 763140 26576594 ~ 26576708 (+) True XLOC_014090
TCONS_00028073 other upstream 1146912 26192822 ~ 26192936 (+) True XLOC_014087
TCONS_00028068 other upstream 1828286 25508793 ~ 25511562 (+) True XLOC_014083
TCONS_00028109 other downstream 785453 28143135 ~ 28143254 (+) True XLOC_014106
TCONS_00028114 other downstream 933694 28291376 ~ 28315953 (+) False XLOC_014108
TCONS_00028117 other downstream 963997 28321679 ~ 28331097 (+) False XLOC_014108
TCONS_00028118 other downstream 973545 28331227 ~ 28334164 (+) True XLOC_014108
TCONS_00028122 other downstream 1845460 29203142 ~ 29203257 (+) True XLOC_014111

Expression Profile

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