RNA id: TU125685


Basic Information

Item Value
RNA id TU125685
length 458
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G110266
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7481908 ~ 7482365 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATAAGGCAGCAATAGAGACGCTCCACTTCTGGTCTTTGGCCATCTTCTCCTCTGTATGTACAGCACATTGCATTGCTAATTTTGTTTGACCTATAGGAAGAAGCTATACTGTAGCAGCCAATCAGTTCCTGTGCATGCAGAATTCACACACGCTTATGTTAAAAATCAGGGCCAGTTGTATTATTTAGTTCACAATGTAGCAAAAACATTtaacaaaacaagcatttcttattggataaATTCAGGTAATTTCTCCCCCATTTCAGCCATTTCTTtcagtttggttcctagtgaatacaccccagttTACACTCTTATTTCCCCAAAAGAAAAGCAGTCACCTACAGACATGAATGAAAGTATGTGGGACAGCttaataaacacacagacatcTATACTAGAATACATATTTGTACTGTGATGCAACACTTTAAAGTGCTTACCCTCTCTAACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125653 lncRNA upstream 36107 7445536 ~ 7445801 (+) True G110237
TU125647 lncRNA upstream 40848 7440470 ~ 7441060 (+) True G110231
TU125649 lncRNA upstream 42327 7439310 ~ 7439581 (+) True G110233
TU125640 lncRNA upstream 48360 7433336 ~ 7433548 (+) True G110228
TU125637 lncRNA upstream 53290 7428130 ~ 7428618 (+) True G110225
TU125684 lncRNA downstream 261 7482626 ~ 7484336 (+) True G110265
TU125689 lncRNA downstream 2876 7485241 ~ 7486293 (+) True G110269
TU125697 lncRNA downstream 27094 7509459 ~ 7509924 (+) True G110276
TU125664 lncRNA downstream 36873 7519238 ~ 7520196 (+) True G110246
TU125663 lncRNA downstream 49398 7531763 ~ 7533820 (+) True G110245
XM_036936694.1 mRNA upstream 104813 7369343 ~ 7377095 (+) True snx10b
XM_036936698.1 mRNA upstream 112760 7358905 ~ 7369148 (+) False cbx3b
XM_036936696.1 mRNA upstream 112760 7358906 ~ 7369148 (+) True cbx3b
XM_036936692.1 mRNA upstream 177199 7282430 ~ 7304709 (+) False pde11al
XM_036936664.1 mRNA upstream 402831 7067286 ~ 7079077 (+) True LOC110535004
XM_036936783.1 mRNA downstream 13818 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936792.1 mRNA downstream 13818 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936801.1 mRNA downstream 13818 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936806.1 mRNA downstream 13818 7496183 ~ 7531274 (+) True tax1bp1b
XM_036936848.1 mRNA downstream 133545 7615910 ~ 7706659 (+) False creb5b
TU125259 other upstream 177263 7303028 ~ 7304645 (+) True pde11al
TU125129 other upstream 340929 7135247 ~ 7140979 (+) False G109821
TU125130 other upstream 340929 7135247 ~ 7140979 (+) False G109821
TU125022 other upstream 538825 6941516 ~ 6943083 (+) True LOC110535156
TU125016 other upstream 570703 6908547 ~ 6911205 (+) True malsu1
TU125753 other downstream 133594 7615959 ~ 7696242 (+) False creb5b
TU125754 other downstream 219617 7701982 ~ 7706489 (+) True creb5b
TU126124 other downstream 416231 7898596 ~ 7935137 (+) True G110644
TU126159 other downstream 591001 8073366 ~ 8103920 (+) True G110674
TU126891 other downstream 1554439 9036804 ~ 9037901 (+) False LOC110518388

Expression Profile