RNA id: TU125684


Basic Information

Item Value
RNA id TU125684
length 1372
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G110265
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7482626 ~ 7484336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATAGTCTCTCTCCTTTTATTAAACAGTAAAACACATACAAATAAGACAGGAACATTCTATCCCTCCCCATGTCAAGAGTAAATAAACCCAACAGGAAGAGAAAAACAAATCAATGAACAGGATCAACACGTGTGACATTGCAGTGAAGTGAGTGGTGACTAGAACTAACAATCATCTGAAGTCCCAGTGGTCTATTGTTGACGAGTGTGGTCGTTAACGAGTATAATGCGGGTCATTTCCTTGACAACGCCTGGGTCTGCTTTCCATGACGACGTGTCCTAAGGTAGCGCTGATATCGTCATGATGATAGCTGTAGTGGTTAGTCAGCCTACTGAGTGACAGTGACTTGAGAGCCTCCCCACACCTCAAACATCCATCTTCTAGCCAAGCCATCGAAAACATTATTAGAAAGCTACTTTAACAAAAGGCAGGATCACAGAGGCAACATGACTCCCATCTTACAGACACAGTGTAGTCTAGTACTCTGCTGAGATGATCTGTCATGTCATCACGGCTGGCTGCGCTCTCTTGGCTTTGACCCAATACACACGTCTTGACAAGTCCtggggagaagggggggggcAAACCGACGCATCCTAACTACATGGTAGTAGTCTTGTATGGAATAGACCCTGCTAAAGCTATGGATGGGGGTTGGGGGTACTGTTCCCCCACCCCTATTGGCCCTcgttctcctcatcctccctcagGAACTGGAAGACAGAGGAGAAGTCTTTGCTGGCGTAGCCCCGAGCACACATCATGCGGTATATCTGGTGGGCCAGGGAGCCCAGAGGGACAGGGGTCTTGGTATTGGTGGCTGTAGTCTGGGCTAGCCCCAGGTCCTGAAGAGGACAAACTCTCATTAGCTCTCTGCCATCACCGCTTGTTGTACACAGCACAGTTAACACATGTCAAACGCACATCTCTTTCCAGTTACATGAAAGTTAATACTATTGACAGAGACATTAACTAAAATAAAGTCACAGGAAATTAAAGAGCCCCTGAAGAATCATCTGTGTCAGTCAAACATTTGTGTACTAAACATCttgcgagagcgagagagcgcgagagagagcgagcgcgcgcgagagagagagagcgcgagagagtgcgcgagagagagagacacaccttgGCCATGAGTTGGGTCCCAAAGCCTCCCTGGTAGTTGTTTCCAGAGGGGACTCCCTCCATGACACCAGGTACAGGGTTGTAGGTGTCACTGGACCAGCAGCGGCCTGAACTCATGTTCAGGATCTTAGCCAGTAGCTTAGGGTCCAGACCTAGTCTGCCAGGGGCCTGATGCCAAGGTTCATGGTCTCAGAGGTCCCGATCATGCCTATCGCCAGCAGCATATTGTTGCAGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125685 lncRNA upstream 261 7481908 ~ 7482365 (+) True G110266
TU125653 lncRNA upstream 36825 7445536 ~ 7445801 (+) True G110237
TU125647 lncRNA upstream 41566 7440470 ~ 7441060 (+) True G110231
TU125649 lncRNA upstream 43045 7439310 ~ 7439581 (+) True G110233
TU125640 lncRNA upstream 49078 7433336 ~ 7433548 (+) True G110228
TU125689 lncRNA downstream 905 7485241 ~ 7486293 (+) True G110269
TU125697 lncRNA downstream 25123 7509459 ~ 7509924 (+) True G110276
TU125664 lncRNA downstream 34902 7519238 ~ 7520196 (+) True G110246
TU125663 lncRNA downstream 47427 7531763 ~ 7533820 (+) True G110245
TU125705 lncRNA downstream 78824 7563160 ~ 7563695 (+) True G110284
XM_036936694.1 mRNA upstream 105531 7369343 ~ 7377095 (+) True snx10b
XM_036936698.1 mRNA upstream 113478 7358905 ~ 7369148 (+) False cbx3b
XM_036936696.1 mRNA upstream 113478 7358906 ~ 7369148 (+) True cbx3b
XM_036936692.1 mRNA upstream 177917 7282430 ~ 7304709 (+) False pde11al
XM_036936664.1 mRNA upstream 403549 7067286 ~ 7079077 (+) True LOC110535004
XM_036936783.1 mRNA downstream 11847 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936792.1 mRNA downstream 11847 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936801.1 mRNA downstream 11847 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936806.1 mRNA downstream 11847 7496183 ~ 7531274 (+) True tax1bp1b
XM_036936848.1 mRNA downstream 131574 7615910 ~ 7706659 (+) False creb5b
TU125259 other upstream 177981 7303028 ~ 7304645 (+) True pde11al
TU125129 other upstream 341647 7135247 ~ 7140979 (+) False G109821
TU125130 other upstream 341647 7135247 ~ 7140979 (+) False G109821
TU125022 other upstream 539543 6941516 ~ 6943083 (+) True LOC110535156
TU125016 other upstream 571421 6908547 ~ 6911205 (+) True malsu1
TU125753 other downstream 131623 7615959 ~ 7696242 (+) False creb5b
TU125754 other downstream 217646 7701982 ~ 7706489 (+) True creb5b
TU126124 other downstream 414260 7898596 ~ 7935137 (+) True G110644
TU126159 other downstream 589030 8073366 ~ 8103920 (+) True G110674
TU126891 other downstream 1552468 9036804 ~ 9037901 (+) False LOC110518388

Expression Profile