RNA id: TU125718


Basic Information

Item Value
RNA id TU125718
length 499
lncRNA type intronic
GC content 0.59
exon number 1
gene id G110296
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7582502 ~ 7583000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATGAGCAGGAAACAACAGTAACTTTCTTTACACGCTCTATGAGCAGGAAACAACAGTAACTTTCTTTACACGCTCTATGAGCAGGAAACAACAGTAACTTTCTTTACACGCTCTATGAGCAGGAAACAACAGTAACTTTCTTTACACACTATGAGCAGGAAACAACAGTAACTTTCTTTACACGCTCTATGAGCAGGAAACAACAGTAACTTTCTTTACACGCTCTATGAGCAGGAAACAACAGTAACTTTCTTTACACGCTCTATGAGCAGGAAACAACAGTAACTTTCTTTACACGCTCTGAGCAGGAAACAACAGTAACTTTCTTTACACGCTCTGAGCAGGAAACAGTAACTTTCTTTACACGCTCTATGAGCAGGAAACAACAGTAACTTTCTTTACACGCTCTATGAGCAGGAAACAACAGTAACTTTCTTTACACGCTCTATGAGCAGGAAACAACAGTAACTTTCTTTACACGCTCTGAGCAGGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125716 lncRNA upstream 281 7581386 ~ 7582221 (+) True G110295
TU125705 lncRNA upstream 18807 7563160 ~ 7563695 (+) True G110284
TU125663 lncRNA upstream 48682 7531763 ~ 7533820 (+) True G110245
TU125664 lncRNA upstream 62306 7519238 ~ 7520196 (+) True G110246
TU125697 lncRNA upstream 72578 7509459 ~ 7509924 (+) True G110276
TU125734 lncRNA downstream 24906 7607906 ~ 7608275 (+) True G110312
TU125773 lncRNA downstream 55888 7638888 ~ 7639259 (+) True G110346
TU125786 lncRNA downstream 79586 7662586 ~ 7663099 (+) True G110358
TU125812 lncRNA downstream 116061 7699061 ~ 7699560 (+) True G110382
TU125813 lncRNA downstream 118499 7701499 ~ 7701703 (+) True G110383
XM_036936783.1 mRNA upstream 51228 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936792.1 mRNA upstream 51228 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936801.1 mRNA upstream 51228 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936806.1 mRNA upstream 51228 7496183 ~ 7531274 (+) True tax1bp1b
XM_036936694.1 mRNA upstream 205407 7369343 ~ 7377095 (+) True snx10b
XM_036936848.1 mRNA downstream 32910 7615910 ~ 7706659 (+) False creb5b
XM_036936841.1 mRNA downstream 32910 7615910 ~ 7706660 (+) False creb5b
XM_036936905.1 mRNA downstream 149957 7732957 ~ 7805441 (+) True chn2
XM_036936862.1 mRNA downstream 232250 7815250 ~ 7829304 (+) False plekha8
XM_036936868.1 mRNA downstream 232250 7815250 ~ 7829304 (+) False plekha8
TU125259 other upstream 277857 7303028 ~ 7304645 (+) True pde11al
TU125129 other upstream 441523 7135247 ~ 7140979 (+) False G109821
TU125130 other upstream 441523 7135247 ~ 7140979 (+) False G109821
TU125022 other upstream 639419 6941516 ~ 6943083 (+) True LOC110535156
TU125016 other upstream 671297 6908547 ~ 6911205 (+) True malsu1
TU125753 other downstream 32959 7615959 ~ 7696242 (+) False creb5b
TU125754 other downstream 118982 7701982 ~ 7706489 (+) True creb5b
TU126124 other downstream 315596 7898596 ~ 7935137 (+) True G110644
TU126159 other downstream 490366 8073366 ~ 8103920 (+) True G110674
TU126891 other downstream 1453804 9036804 ~ 9037901 (+) False LOC110518388

Expression Profile