RNA id: TU125812


Basic Information

Item Value
RNA id TU125812
length 220
lncRNA type intronic
GC content 0.40
exon number 2
gene id G110382
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7699061 ~ 7699560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggagggcaCGTGGCATAGCCATAATTTTGTTTTTAGGGAAGTGACTGTGAATAGTAATTTCAAACAGGCAGAGTAGGGACTGTGAATAGTGACTTTACACATGTATAGTAGGGACTGTGAATAGTGATTTTAAACAGGTAGAGTAGGGACTGTGAATAGTGATTTTAAACAGGTAGAGTAGGGACTGTGAATAGTGACTTTAAACAGGTATAGTAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125786 lncRNA upstream 35962 7662586 ~ 7663099 (+) True G110358
TU125773 lncRNA upstream 59802 7638888 ~ 7639259 (+) True G110346
TU125734 lncRNA upstream 90786 7607906 ~ 7608275 (+) True G110312
TU125718 lncRNA upstream 116061 7582502 ~ 7583000 (+) True G110296
TU125716 lncRNA upstream 116840 7581386 ~ 7582221 (+) True G110295
TU125813 lncRNA downstream 1939 7701499 ~ 7701703 (+) True G110383
TU125759 lncRNA downstream 7380 7706940 ~ 7707860 (+) True G110332
TU125751 lncRNA downstream 9607 7709167 ~ 7709702 (+) True G110324
TU125757 lncRNA downstream 12039 7711599 ~ 7712283 (+) True G110330
TU125747 lncRNA downstream 13564 7713124 ~ 7714186 (+) True G110322
XM_036936783.1 mRNA upstream 167787 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936792.1 mRNA upstream 167787 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936801.1 mRNA upstream 167787 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936806.1 mRNA upstream 167787 7496183 ~ 7531274 (+) True tax1bp1b
XM_036936694.1 mRNA upstream 321966 7369343 ~ 7377095 (+) True snx10b
XM_036936905.1 mRNA downstream 33397 7732957 ~ 7805441 (+) True chn2
XM_036936862.1 mRNA downstream 115690 7815250 ~ 7829304 (+) False plekha8
XM_036936868.1 mRNA downstream 115690 7815250 ~ 7829304 (+) False plekha8
XR_005034857.1 mRNA downstream 115690 7815250 ~ 7829304 (+) False plekha8
XR_005034858.1 mRNA downstream 115690 7815250 ~ 7829304 (+) True plekha8
TU125753 other upstream 2819 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 394416 7303028 ~ 7304645 (+) True pde11al
TU125129 other upstream 558082 7135247 ~ 7140979 (+) False G109821
TU125130 other upstream 558082 7135247 ~ 7140979 (+) False G109821
TU125022 other upstream 755978 6941516 ~ 6943083 (+) True LOC110535156
TU125754 other downstream 2422 7701982 ~ 7706489 (+) True creb5b
TU126124 other downstream 199036 7898596 ~ 7935137 (+) True G110644
TU126159 other downstream 373806 8073366 ~ 8103920 (+) True G110674
TU126891 other downstream 1337244 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 1521925 9221485 ~ 9229025 (+) True LOC110535224

Expression Profile