RNA id: TU126144


Basic Information

Item Value
RNA id TU126144
length 201
lncRNA type read_through
GC content 0.45
exon number 2
gene id G110660
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7912531 ~ 7981149 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACACAGACTATTTTCATCATCATGGGAGGTGTGAGAGAATTGCTGCTCGTTGTGATGACTGTGGGGGTTGTCAAAGctgcgaccggcccgtctggcgacgatgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgaccggcccgtctggcgacgacgccacctctgaagctgcgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126127 lncRNA upstream 8343 7879860 ~ 7904188 (+) True G110646
TU126121 lncRNA upstream 40245 7871758 ~ 7872286 (+) True G110642
TU125839 lncRNA upstream 60944 7849144 ~ 7851587 (+) True G110409
TU125835 lncRNA upstream 72998 7838484 ~ 7839533 (+) True G110405
TU125756 lncRNA upstream 102542 7809544 ~ 7809989 (+) True G110329
TU126157 lncRNA downstream 74426 8055575 ~ 8138469 (+) True G110673
TU126188 lncRNA downstream 148612 8129761 ~ 8132133 (+) True G110702
TU126258 lncRNA downstream 292842 8273991 ~ 8274437 (+) True G110751
TU126206 lncRNA downstream 303161 8284310 ~ 8329229 (+) True G110717
TU126449 lncRNA downstream 358762 8339911 ~ 8340121 (+) True G110900
XM_036936921.1 mRNA upstream 55082 7830223 ~ 7857449 (+) False LOC110514761
XM_036936918.1 mRNA upstream 55082 7830227 ~ 7857449 (+) True LOC110514761
XM_036936868.1 mRNA upstream 83227 7815250 ~ 7829304 (+) False plekha8
XM_036936997.1 mRNA downstream 4679 7985828 ~ 7988121 (+) True LOC118937630
XM_036937004.1 mRNA downstream 25682 8006831 ~ 8014142 (+) True LOC118937631
XM_036937008.1 mRNA downstream 37129 8018278 ~ 8020571 (+) True LOC118937632
XM_036937020.1 mRNA downstream 44821 8025970 ~ 8028263 (+) True LOC118937633
XM_036937027.1 mRNA downstream 52041 8033190 ~ 8040571 (+) True LOC110516794
TU125754 other upstream 206042 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 216289 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 607886 7303028 ~ 7304645 (+) True pde11al
TU125129 other upstream 771552 7135247 ~ 7140979 (+) False G109821
TU126159 other downstream 92217 8073366 ~ 8103920 (+) True G110674
TU126891 other downstream 1055655 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 1240336 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 1349120 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 1349120 9330269 ~ 9331616 (+) False G111453

Expression Profile