RNA id: TU126477


Basic Information

Item Value
RNA id TU126477
length 411
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G110928
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8360900 ~ 8361310 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggtgatatgactctggactagagtgatggtggaggtggtgatagggctctggactagagtgatggtggaggtggtgatatggctctggactagagtgatggtggaggtggtgatagGGCTCTGGACTAGAGTGATGTTAGAGGTGGTGATATGGCTCTGGACtagagtgatggtggaggtggtgatatggctctggactagagtgatggtggaggtggtgatatgACTCTGGACTAGAGAGTGATCAGACTCCCTCAGTTGTAGTAAGCAACCATATAGTTCTGGGGAACAACTGGTACTCTGAGAACTAGGAGGGCCTTTCAGACTCAGGTTTGTGGATGACATTCTTGTACTCCAGTGTTGTCAAATGTcaataattgattgattgattgattgatattctAATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126459 lncRNA downstream 12855 8347539 ~ 8348045 (-) True G110910
TU126405 lncRNA downstream 32053 8326499 ~ 8328847 (-) False G110873
TU126406 lncRNA downstream 32053 8326499 ~ 8328847 (-) False G110873
TU126408 lncRNA downstream 32053 8326499 ~ 8328847 (-) False G110873
TU126409 lncRNA downstream 32053 8326499 ~ 8328847 (-) True G110873
TU126487 lncRNA upstream 15334 8376644 ~ 8377035 (-) True G110935
TU126517 lncRNA upstream 35452 8396762 ~ 8397110 (-) True G110962
TU126593 lncRNA upstream 59620 8420930 ~ 8421684 (-) True G111017
TU126631 lncRNA upstream 138794 8500104 ~ 8505604 (-) False G111047
TU126641 lncRNA upstream 162013 8523323 ~ 8523546 (-) True G111055
XM_036937047.1 mRNA downstream 236741 8088064 ~ 8124159 (-) False LOC110516569
XM_036937043.1 mRNA downstream 237218 8088064 ~ 8123682 (-) False LOC110516569
XM_036937038.1 mRNA downstream 237219 8088064 ~ 8123681 (-) False LOC110516569
XM_036936987.1 mRNA downstream 412383 7943361 ~ 7948517 (-) False LOC118937629
XM_021586317.2 mRNA upstream 32475 8393785 ~ 8395267 (-) False LOC100136714
XM_021586325.2 mRNA upstream 32475 8393785 ~ 8395476 (-) False LOC100136714
NM_001124677.1 mRNA upstream 33426 8394736 ~ 8395227 (-) True LOC100136714
XM_036937149.1 mRNA upstream 62978 8424288 ~ 8429320 (-) False LOC118937639
XM_036937096.1 mRNA upstream 104797 8466107 ~ 8471212 (-) False LOC118936301
TU126444 other downstream 35220 8324960 ~ 8325680 (-) False G110896
TU126445 other downstream 35220 8324960 ~ 8325680 (-) True G110896
TU126328 other downstream 237231 8104064 ~ 8123669 (-) False LOC110516569
TU126324 other downstream 237344 8097895 ~ 8123556 (-) False LOC110516569
TU126590 other upstream 62501 8423811 ~ 8426012 (-) True LOC118937639
TU126633 other upstream 140898 8502208 ~ 8505604 (-) True G111047
TU126623 other upstream 160692 8522002 ~ 8522709 (-) False G111044
TU126626 other upstream 160692 8522002 ~ 8522761 (-) True G111044
TU127197 other upstream 343994 8705304 ~ 8736398 (-) True LOC110535184

Expression Profile